Detailed information NTG0158121

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AOT14_RS13400
• Genome accession: NZ_CP012900
• Coordinates: 3032595..3033962 (+)
• Length: 455 a.a.
• NCBI ID: WP_054667220.1
• Uniprot ID: A0A0S1B260
• Organism: Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3027595..3038962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOT14_RS13380 (AOT14_27400)	-	3027825..3028508 (+)	684	WP_054667215.1	DUF3108 domain-containing protein	-
AOT14_RS13385 (AOT14_27410)	sucD	3028585..3029460 (-)	876	WP_054667217.1	succinate--CoA ligase subunit alpha	-
AOT14_RS13390 (AOT14_27420)	sucC	3029485..3030657 (-)	1173	WP_054667218.1	ADP-forming succinate--CoA ligase subunit beta	-
AOT14_RS13395 (AOT14_27430)	-	3030918..3032531 (+)	1614	WP_054667219.1	ATP-binding protein	-
AOT14_RS13400 (AOT14_27440)	pilR	3032595..3033962 (+)	1368	WP_054667220.1	sigma-54 dependent transcriptional regulator	Regulator
AOT14_RS13405 (AOT14_27450)	-	3034139..3036013 (-)	1875	WP_162486447.1	ATP-binding protein	-
AOT14_RS13410 (AOT14_27460)	-	3035989..3038262 (-)	2274	WP_054667224.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49030.14 Da
• Isoelectric Point: 6.2561

>NTDB_id=158121 AOT14_RS13400 WP_054667220.1 3032595..3033962(+) (pilR) [Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLGSNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGMVKHALELNNSERVAQPAAPESASRLLGESQAMSDLRSTIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGSATEVPVDVRILSATHKDLAVLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQLPTPLLSPSALDALGGYAFPGNVRELENVLERALALADGDSIGASDLRLPTPRGDAGSASEEAPAD
IDAGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=158121 AOT14_RS13400 WP_054667220.1 3032595..3033962(+) (pilR) [Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2]
ATGAACGTGACGCATAGCGCGCTGGTCGTCGACGACGAACGGGACATCCGCGAACTCCTGGTCCTCACCCTCGGCAGGAT
GGGACTGCGCATCAGTACCGCCGCCAATCTGGCCGAAGCCCGCGAACTGCTGGGCAGCAACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCACGCGACCATCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCACTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAGCTCAACAACAGCGAGCGCGTGGCGCAGCCCGCCGCAC
CGGAAAGCGCCTCGCGCCTGCTCGGCGAATCGCAGGCGATGTCCGACCTGCGCAGCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGACCAGGGTGCGCG
CGCGGCCGGGCCGTTCATCCCGGTCAACTGCGGCGCCATCCCGGGCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCACGCGGACAAGCCGGGACTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTCGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCTCGGC
CACCGAGGTACCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCGGTACTGGTGCAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTCCCCCCGCTGCGCGAGCGGCGCGGCGACCTGCCGCAG
CTGGCCGCGGCCATCCTCAGCCGGCTGGCGCGCTCGCAGCAGCTGCCCACGCCGCTGTTGTCACCCTCGGCGCTGGACGC
CCTGGGCGGTTACGCCTTCCCAGGCAACGTGCGCGAACTGGAGAACGTACTGGAACGCGCGCTCGCCCTGGCCGATGGCG
ACAGCATCGGCGCCAGCGACCTGCGCCTGCCGACCCCGCGCGGCGATGCCGGCAGCGCGAGCGAAGAAGCTCCGGCCGAC
ATCGATGCCGGCAATGCCGCCCTTCCCTCGTACATCGAACAGATGGAACGCGCGGCCATCCAGAAGGCGCTGGAAGAAAA
CCGCTGGAACCGGACCCGCACCGCCGCGCAGTTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAGAAGCTGGGCA
TGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: A0A0S1B260

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.302	99.121	0.637
pilR	Acinetobacter baumannii strain A118	48.913	100	0.495