Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AO703_RS01400 Genome accession   NZ_CP012871
Coordinates   305660..306196 (+) Length   178 a.a.
NCBI ID   WP_062740020.1    Uniprot ID   -
Organism   [Enterobacter] lignolyticus strain G5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300660..311196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO703_RS01385 (AO703_01385) aphA 301377..302093 (+) 717 WP_013368064.1 acid phosphatase AphA -
  AO703_RS01390 (AO703_01390) - 302232..302585 (+) 354 WP_044612197.1 MmcQ/YjbR family DNA-binding protein -
  AO703_RS01395 (AO703_01395) uvrA 302589..305411 (-) 2823 WP_062740019.1 excinuclease ABC subunit UvrA -
  AO703_RS01400 (AO703_01400) ssb 305660..306196 (+) 537 WP_062740020.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AO703_RS01405 (AO703_01405) - 306432..306902 (+) 471 WP_013368060.1 PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB -
  AO703_RS01410 (AO703_01410) - 306908..307687 (+) 780 WP_062740021.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
  AO703_RS01415 (AO703_01415) - 307689..308501 (+) 813 WP_062740022.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  AO703_RS01420 (AO703_01420) - 308501..308938 (+) 438 WP_062740023.1 PTS sugar transporter subunit IIA -
  AO703_RS01425 (AO703_01425) - 308928..309641 (+) 714 WP_013368056.1 GntR family transcriptional regulator -
  AO703_RS01430 (AO703_01430) - 309645..310340 (+) 696 WP_062740024.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19067.11 Da        Isoelectric Point: 5.2456

>NTDB_id=157956 AO703_RS01400 WP_062740020.1 305660..306196(+) (ssb) [[Enterobacter] lignolyticus strain G5]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=157956 AO703_RS01400 WP_062740020.1 305660..306196(+) (ssb) [[Enterobacter] lignolyticus strain G5]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCTGAAGTTGCCGGCGAATACCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAGTACACCACTGAGGTGGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCGCCGGCAGGCGGCAATATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCC
GCTCCGGCGCCGTCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.77
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.59
  ssb Neisseria meningitidis MC58

46.667

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.365

Multiple sequence alignment