Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AOY20_RS03080 Genome accession   NZ_CP012808
Coordinates   649620..651104 (+) Length   494 a.a.
NCBI ID   WP_054580504.1    Uniprot ID   -
Organism   Acinetobacter equi strain 114     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 644620..656104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS03055 (AOY20_03055) ribD 645538..646641 (-) 1104 WP_054580500.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AOY20_RS03060 (AOY20_03060) nrdR 646670..647128 (-) 459 WP_054580501.1 transcriptional regulator NrdR -
  AOY20_RS03065 (AOY20_03065) - 647269..648660 (-) 1392 WP_054580502.1 ammonium transporter -
  AOY20_RS03070 (AOY20_03070) glnK 648723..649061 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  AOY20_RS03075 (AOY20_03075) - 649324..649551 (+) 228 WP_054580503.1 accessory factor UbiK family protein -
  AOY20_RS03080 (AOY20_03080) comM 649620..651104 (+) 1485 WP_054580504.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AOY20_RS03085 (AOY20_03085) - 651139..651909 (-) 771 WP_054580505.1 TorF family putative porin -
  AOY20_RS03090 (AOY20_03090) - 652432..653739 (+) 1308 WP_054580506.1 OprD family outer membrane porin -
  AOY20_RS03095 (AOY20_03095) ppa 653828..654364 (-) 537 WP_005233448.1 inorganic diphosphatase -
  AOY20_RS03100 (AOY20_03100) - 654483..654884 (-) 402 WP_054580507.1 MAPEG family protein -
  AOY20_RS03105 (AOY20_03105) - 654996..655376 (+) 381 WP_054580508.1 hypothetical protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54609.92 Da        Isoelectric Point: 8.0315

>NTDB_id=157746 AOY20_RS03080 WP_054580504.1 649620..651104(+) (comM) [Acinetobacter equi strain 114]
MSFSKVYTRGLLGIHAPSIEVEVHISQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPEQTAQDIEFVGELALDGQLRQITGILSIAIACQKANRLLILPHTNADEAAQLPNFQIIAAQNL
KEVCQHLDQSHPLDPYIVNKERVSKKIQLDLEDVKGQLRPRRALEIAAAGGHSILFRGPPGTGKTLLASRLPSILPPLTL
EENLEVASIYSVANTTHYFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQFIAAMNPCPCGYAFNQDIRCQCTVDAIKRYQNRISGPLLDRIDLHIDVPPLQANELQNNVPIE
TSEMVRLRVIQAYEKQMQRQNMLNMALSAKQLEKFATLSPQAAKIIEIAQERLNLSARAYHRILRVARTIADLANSDEIQ
NQHLSEALSYRNQQ

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=157746 AOY20_RS03080 WP_054580504.1 649620..651104(+) (comM) [Acinetobacter equi strain 114]
ATGTCTTTTTCAAAAGTTTATACGCGTGGACTATTAGGAATCCACGCCCCTTCTATTGAAGTAGAAGTCCATATTAGCCA
AGGCTTACCGTCATTGACTATTGTTGGTTTACCTGAGGCAGCTGTTCGGGAAAGTAAAGACCGTGTTCGCTCTGCAATTA
TCAATAGTGGTTTTCAATTTCCAACTAAGCGCCTCACAATTAATTTAGCACCAGCGGACTTACCGAAAGATGGATCAAGA
CTTGATCTTGCAATAGCCTTAGGAATTTTAATTGCATCAGGACAGCTACCAGAACAGACTGCTCAAGATATTGAATTTGT
AGGTGAACTTGCTTTAGATGGACAACTTCGCCAAATTACAGGTATTTTAAGTATTGCTATTGCCTGTCAAAAGGCAAATC
GTCTTTTAATTCTGCCCCATACAAATGCAGATGAAGCCGCACAATTGCCAAATTTTCAAATCATTGCTGCCCAAAATTTA
AAAGAAGTATGTCAACATTTAGATCAAAGTCATCCTCTAGATCCGTATATCGTAAATAAAGAAAGAGTTAGTAAAAAAAT
TCAACTCGATTTAGAAGATGTTAAAGGACAATTACGCCCACGACGTGCTTTAGAAATTGCAGCAGCTGGCGGACATTCCA
TTTTATTTCGTGGTCCTCCTGGTACAGGAAAAACTTTGTTGGCTTCACGTTTGCCCAGTATTTTACCGCCTTTGACTTTA
GAGGAAAATTTAGAAGTTGCAAGTATTTATTCTGTCGCAAATACTACACATTATTTTGGTCAAAGACCTTTCCGTGCACC
ACATCACACTGCATCAGCAATCGCCTTAGTTGGCGGAGGCTCACACCCAAAACCAGGTGAAATAACGTTAGCTCATTTAG
GTGTACTATTTTTAGATGAATTACCTGAATTTGACCGTAAAGTTTTAGAAGTACTTAGACAACCCTTAGAATCAAAAGAA
ATTGTGATTTCACGGGCATCTCGACAAATTACATTTCCTGCAAACTTTCAATTTATTGCAGCGATGAATCCTTGTCCTTG
TGGCTATGCTTTTAATCAAGATATACGATGCCAATGCACAGTAGATGCAATTAAACGTTATCAAAATAGAATTTCTGGTC
CATTATTAGACCGTATTGATTTACATATTGATGTTCCGCCTTTACAAGCAAATGAACTTCAAAATAATGTGCCAATAGAA
ACATCCGAAATGGTGCGTTTACGTGTAATACAAGCCTATGAAAAACAAATGCAACGTCAAAATATGCTAAACATGGCATT
AAGTGCTAAACAACTCGAAAAATTTGCAACATTAAGCCCACAAGCAGCTAAAATTATTGAAATTGCTCAAGAAAGACTTA
ATTTATCTGCACGTGCCTATCATCGTATACTACGTGTTGCACGTACAATTGCAGATTTAGCTAATTCCGATGAAATTCAA
AATCAGCATCTCTCAGAAGCTCTCTCTTATAGAAACCAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.104

100

0.526
  comM Vibrio campbellii strain DS40M4

52.121

100

0.522
  comM Glaesserella parasuis strain SC1401

50.301

100

0.508
  comM Vibrio cholerae strain A1552

50.101

100

0.502
  comM Legionella pneumophila str. Paris

49.798

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.798

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.104

100

0.488

Multiple sequence alignment