Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FORC17_RS10685 Genome accession   NZ_CP012739
Coordinates   2314871..2315173 (-) Length   100 a.a.
NCBI ID   WP_011078144.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2309871..2320173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS10660 (FORC17_2085) - 2310414..2311628 (+) 1215 WP_011080966.1 pyridoxal phosphate-dependent aminotransferase -
  FORC17_RS10665 (FORC17_2086) yfbR 2311745..2312293 (+) 549 WP_231846899.1 5'-deoxynucleotidase -
  FORC17_RS10670 (FORC17_2087) - 2312299..2313630 (+) 1332 WP_011078141.1 anti-phage deoxyguanosine triphosphatase -
  FORC17_RS10675 (FORC17_2088) - 2313652..2314260 (-) 609 WP_011078142.1 tRNA-uridine aminocarboxypropyltransferase -
  FORC17_RS10680 (FORC17_2089) rrtA 2314240..2314824 (+) 585 WP_011078143.1 rhombosortase -
  FORC17_RS10685 (FORC17_2090) comEA 2314871..2315173 (-) 303 WP_011078144.1 ComEA family DNA-binding protein Machinery gene
  FORC17_RS10690 (FORC17_2091) ppiD 2315306..2317165 (-) 1860 WP_011078145.1 peptidylprolyl isomerase -
  FORC17_RS10695 (FORC17_2092) - 2317342..2317614 (-) 273 WP_013572181.1 HU family DNA-binding protein -
  FORC17_RS10700 (FORC17_2093) lon 2317808..2320159 (-) 2352 WP_011078147.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10866.71 Da        Isoelectric Point: 9.6573

>NTDB_id=157448 FORC17_RS10685 WP_011078144.1 2314871..2315173(-) (comEA) [Vibrio vulnificus strain FORC_017]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=157448 FORC17_RS10685 WP_011078144.1 2314871..2315173(-) (comEA) [Vibrio vulnificus strain FORC_017]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGCATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36

Multiple sequence alignment