Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FORC17_RS01850 | Genome accession | NZ_CP012739 |
| Coordinates | 387915..388454 (+) | Length | 179 a.a. |
| NCBI ID | WP_011079389.1 | Uniprot ID | Q7MHB8 |
| Organism | Vibrio vulnificus strain FORC_017 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 382915..393454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC17_RS01835 (FORC17_0321) | uvrA | 382946..385768 (-) | 2823 | WP_013571056.1 | excinuclease ABC subunit UvrA | - |
| FORC17_RS01840 (FORC17_0322) | galU | 385910..386782 (-) | 873 | WP_011079387.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FORC17_RS01845 (FORC17_0323) | qstR | 386968..387615 (-) | 648 | WP_011079388.1 | response regulator transcription factor | Regulator |
| FORC17_RS01850 (FORC17_0324) | ssb | 387915..388454 (+) | 540 | WP_011079389.1 | single-stranded DNA-binding protein | Machinery gene |
| FORC17_RS01855 (FORC17_0325) | csrD | 388607..390604 (+) | 1998 | WP_065090053.1 | RNase E specificity factor CsrD | - |
| FORC17_RS01860 (FORC17_0326) | - | 390617..392077 (+) | 1461 | WP_065090054.1 | MSHA biogenesis protein MshI | - |
| FORC17_RS01865 (FORC17_0327) | gspM | 392074..392724 (+) | 651 | WP_045596391.1 | type II secretion system protein GspM | - |
| FORC17_RS01870 (FORC17_0328) | - | 392717..393037 (+) | 321 | WP_011079393.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19794.97 Da Isoelectric Point: 5.2358
>NTDB_id=157426 FORC17_RS01850 WP_011079389.1 387915..388454(+) (ssb) [Vibrio vulnificus strain FORC_017]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=157426 FORC17_RS01850 WP_011079389.1 387915..388454(+) (ssb) [Vibrio vulnificus strain FORC_017]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGCAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGATGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGCAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGATGACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.333 |
100 |
0.838 |
| ssb | Glaesserella parasuis strain SC1401 |
53.804 |
100 |
0.553 |
| ssb | Neisseria meningitidis MC58 |
46.237 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
46.237 |
100 |
0.48 |