Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SanJ4206_RS02890 Genome accession   NZ_CP012719
Coordinates   577796..578827 (+) Length   343 a.a.
NCBI ID   WP_003028159.1    Uniprot ID   A0AAI9J716
Organism   Streptococcus anginosus strain J4206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 572796..583827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS02875 (SanJ4206_0535) - 574064..574771 (+) 708 WP_003028166.1 glucosamine-6-phosphate deaminase -
  SanJ4206_RS02880 (SanJ4206_0536) - 574887..576263 (+) 1377 WP_022525369.1 DUF1958 domain-containing protein -
  SanJ4206_RS02885 (SanJ4206_0537) - 576342..577511 (+) 1170 WP_106382586.1 MFS transporter -
  SanJ4206_RS02890 (SanJ4206_0538) coiA 577796..578827 (+) 1032 WP_003028159.1 competence protein CoiA Machinery gene
  SanJ4206_RS02895 pepF 578779..580581 (+) 1803 WP_003028156.1 oligoendopeptidase F Regulator
  SanJ4206_RS02900 (SanJ4206_0539) - 580583..581266 (+) 684 WP_003028154.1 O-methyltransferase -
  SanJ4206_RS02905 (SanJ4206_0540) prsA 581373..582311 (+) 939 WP_003028152.1 peptidylprolyl isomerase PrsA -
  SanJ4206_RS02910 (SanJ4206_0541) - 582536..583018 (+) 483 WP_003028148.1 LURP-one-related/scramblase family protein -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 40757.95 Da        Isoelectric Point: 9.2503

>NTDB_id=156771 SanJ4206_RS02890 WP_003028159.1 577796..578827(+) (coiA) [Streptococcus anginosus strain J4206]
MLMACQENGKMLNAVEDTVNPLDRFLCPACQEAVRFKNGKVMRPHFAHISLKNCHFSTENESVEHLNLKAALFTWARKSN
HAIQVEAYLPELQQIADLLVEKQIALEVQCSSLSQKRLKERTDSYRQYGYRVLWLLGKKLWLKNALTNLQKDFLYFSQNM
GFHLWEVDEQQQLLRLKYLIHEDLHGKVQYKEKNFAFGKGNLLDIFRQPFCKQEMTSFLAKEDKNICRYVRQQLYYQQPK
WMKWQAELYQAGDNLLTKTANDFYPQVQPVRSSSFCQIFQDLTPYYQQFSAYYEKEKNKNLQILYPPAFYAKIFGNIYDR
IGRTEEILWQNKEMKLKKNTLGT

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=156771 SanJ4206_RS02890 WP_003028159.1 577796..578827(+) (coiA) [Streptococcus anginosus strain J4206]
ATGTTAATGGCTTGTCAGGAAAACGGAAAAATGCTAAATGCTGTGGAAGATACGGTAAATCCGTTGGATAGGTTTCTCTG
CCCGGCTTGTCAGGAAGCGGTACGATTTAAGAATGGCAAGGTGATGCGACCGCATTTTGCTCATATTTCCTTGAAAAACT
GCCATTTTTCTACGGAAAATGAAAGTGTAGAACACCTAAATCTGAAAGCTGCTTTGTTTACTTGGGCTAGAAAGTCCAAT
CATGCGATTCAAGTGGAAGCTTATTTACCAGAATTGCAGCAAATCGCAGATTTGTTAGTTGAAAAACAAATTGCACTTGA
AGTTCAATGCAGTTCGCTTAGTCAAAAACGCTTAAAAGAGCGTACGGACAGTTATCGTCAGTATGGCTATCGCGTTCTTT
GGCTCTTGGGAAAGAAACTTTGGCTGAAAAATGCCTTGACCAATTTACAAAAGGATTTTCTCTATTTTAGTCAAAATATG
GGCTTTCATCTGTGGGAAGTAGATGAACAGCAACAGCTTTTGAGGCTTAAATACTTGATTCATGAAGATTTGCATGGCAA
GGTTCAGTATAAGGAAAAAAATTTTGCTTTTGGCAAAGGAAATCTTTTAGACATCTTTCGTCAGCCATTTTGCAAGCAGG
AGATGACGAGTTTTCTGGCAAAAGAAGATAAAAATATTTGCCGTTATGTGCGTCAGCAGCTCTATTATCAGCAGCCCAAA
TGGATGAAATGGCAAGCAGAATTGTACCAAGCGGGTGATAATTTATTAACCAAAACAGCTAATGACTTTTATCCGCAGGT
TCAACCTGTTCGTTCCAGCTCTTTCTGCCAGATTTTTCAAGATCTCACACCTTATTACCAGCAATTTTCAGCTTATTATG
AAAAAGAAAAAAATAAAAATCTCCAAATTCTCTATCCCCCAGCTTTTTATGCAAAGATTTTTGGCAATATTTATGATAGA
ATAGGAAGGACGGAGGAAATTTTATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.503

91.545

0.49

  coiA Streptococcus pneumoniae Rx1

52.866

91.545

0.484

  coiA Streptococcus pneumoniae D39

52.866

91.545

0.484

  coiA Streptococcus pneumoniae R6

52.866

91.545

0.484

  coiA Streptococcus pneumoniae TIGR4

52.548

91.545

0.481

  coiA Lactococcus lactis subsp. cremoris KW2

43.519

94.461

0.411


Multiple sequence alignment