Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   SanJ4206_RS02805 Genome accession   NZ_CP012719
Coordinates   556873..559023 (-) Length   716 a.a.
NCBI ID   WP_003028194.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4206     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 551873..564023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS02785 (SanJ4206_0516) cvfB 552578..553432 (+) 855 WP_003028203.1 RNA-binding virulence regulatory protein CvfB -
  SanJ4206_RS02790 (SanJ4206_0517) holA 553514..554551 (+) 1038 WP_157622023.1 DNA polymerase III subunit delta -
  SanJ4206_RS02795 (SanJ4206_0518) - 554622..555227 (+) 606 WP_022525198.1 superoxide dismutase -
  SanJ4206_RS02800 (SanJ4206_0519c) - 555501..556862 (-) 1362 WP_003028197.1 bacteriocin secretion accessory protein -
  SanJ4206_RS02805 (SanJ4206_0520c) comA/nlmT 556873..559023 (-) 2151 WP_003028194.1 peptide cleavage/export ABC transporter Regulator
  SanJ4206_RS02810 (SanJ4206_0521) - 559328..559555 (+) 228 WP_231466403.1 bacteriocin immunity protein -
  SanJ4206_RS02815 - 559737..559988 (+) 252 WP_022525199.1 hypothetical protein -
  SanJ4206_RS02820 (SanJ4206_0522) - 560040..560369 (+) 330 WP_003028191.1 hypothetical protein -
  SanJ4206_RS02825 (SanJ4206_0523) - 560584..561639 (+) 1056 WP_022525371.1 serine hydrolase -
  SanJ4206_RS02830 (SanJ4206_0524) - 561773..562459 (+) 687 WP_003028187.1 Crp/Fnr family transcriptional regulator -
  SanJ4206_RS02835 (SanJ4206_0525) arcA 562769..563998 (+) 1230 WP_003028185.1 arginine deiminase -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 80626.99 Da        Isoelectric Point: 9.0519

>NTDB_id=156770 SanJ4206_RS02805 WP_003028194.1 556873..559023(-) (comA/nlmT) [Streptococcus anginosus strain J4206]
MNFKKSFVPQIDARDCGIAALASIARYYDSNYSLAHLRELAKTDKEGTTALGIVKAAKEMGFETRPIQADMTLFDTEELP
YPFIVHVNKNGNLQHYYVVYKNEKKHLLIGDPDPTVKITKISKEQFVKDWTGVAIFLAPKPSYEPHKDKKNELASFLPLI
FKQRSLIFYIVLASLLVTLINIVGSYYLQGVLDEYIPNQMKSTLGIISIGLIIAYILQQMMSFSRDYLLTVLSQRLTIDV
ILSYIRHIFELPMSFFATRRTGEIISRFTDANSIIDALASTILSLFLDLSIVMIVGNVLLLQNTNLFLLTLLAIPIYALI
IFAFMKPFEKMNNDVMQSNAMVNSAIIEDINGIETIKSLTSEESRYQKIDSEFVDYLDKTFKLSKYSIMQTALKQGAQLI
LNVVILWVGASLVMSQKISIGQLITFNTLLSYFTSPLESIINLQTKLQSAKVANHRLNEVYLVESEFKTKQVLTEKKFLA
GDITFHNVSYKYGFGRDILSDISLTIKKGDKISLVGVSGSGKTTLAKMIVHFYEPYQGQIRLNGNDLKTIDKKVLRQYIN
YLPQQAYIFSGSILDNLTLGADQTVSQSDILRACEIAEIRSDIEQMPMGYQTELSDGAGLSGGQKQRITLARALLTKSPI
LILDEATSGLDVLTEKKVIDNLMKLPDKTIIFVAHHLSISKRTNQIIVLDQGKVIETGSHTELIGRKGFYYHLFNK

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=156770 SanJ4206_RS02805 WP_003028194.1 556873..559023(-) (comA/nlmT) [Streptococcus anginosus strain J4206]
GTGAATTTTAAAAAATCATTTGTTCCGCAAATAGATGCTAGAGATTGTGGTATTGCTGCTCTGGCTTCCATTGCTAGATA
CTATGATTCAAATTATTCTTTAGCACACTTGAGAGAGCTCGCAAAGACAGACAAAGAAGGGACAACTGCACTTGGAATTG
TCAAAGCAGCAAAAGAAATGGGCTTTGAAACCCGACCAATCCAAGCAGACATGACATTGTTTGATACAGAAGAGCTTCCC
TATCCTTTCATCGTACATGTCAACAAGAATGGCAATCTTCAGCACTATTATGTCGTTTATAAAAACGAGAAAAAGCACTT
GCTTATCGGTGATCCTGATCCAACTGTCAAAATAACTAAGATTAGCAAAGAACAATTTGTAAAAGATTGGACTGGTGTTG
CTATCTTTCTCGCACCGAAACCTAGCTATGAACCTCATAAGGATAAGAAGAACGAGCTTGCTAGCTTTTTACCACTCATC
TTTAAACAGCGTTCTTTGATTTTTTATATTGTCTTAGCTAGTTTGCTCGTGACCCTCATCAACATTGTGGGCTCCTATTA
TCTGCAAGGTGTTTTGGACGAATACATCCCAAATCAGATGAAATCAACTCTTGGGATTATTTCAATTGGGCTTATCATTG
CCTACATCTTACAGCAAATGATGAGTTTTTCAAGAGACTACCTGCTAACAGTGCTCAGTCAACGATTAACAATTGATGTG
ATTTTGTCTTATATTCGGCATATTTTTGAATTACCAATGTCCTTTTTTGCGACGAGACGCACTGGGGAGATTATTTCTCG
TTTTACAGATGCCAACTCCATTATTGATGCTCTAGCTTCAACTATCCTGTCTCTCTTTCTTGATTTGTCCATTGTGATGA
TTGTCGGCAATGTTCTTTTACTGCAAAATACCAATCTCTTTTTACTCACCTTGCTTGCAATTCCTATCTACGCTCTCATT
ATTTTTGCTTTTATGAAGCCTTTTGAAAAAATGAATAACGATGTTATGCAAAGCAATGCTATGGTAAATTCTGCCATTAT
CGAAGATATCAACGGAATTGAAACCATTAAATCTTTAACCAGCGAAGAAAGCCGTTACCAAAAGATTGATAGCGAGTTTG
TTGATTATCTGGATAAGACTTTCAAATTAAGTAAATATTCCATTATGCAAACAGCTCTCAAACAAGGAGCACAACTTATT
TTGAATGTGGTCATTCTCTGGGTTGGAGCTTCTTTAGTCATGTCTCAAAAGATTTCAATTGGTCAGCTGATTACTTTCAA
TACTCTCCTTTCATACTTTACTAGTCCACTTGAAAGTATCATCAATCTTCAAACCAAACTGCAATCAGCTAAAGTTGCCA
ATCATCGACTGAATGAAGTTTATCTGGTAGAATCCGAATTCAAAACCAAGCAAGTCCTTACGGAGAAAAAATTCTTAGCT
GGAGATATTACTTTCCATAACGTCTCCTATAAATACGGATTTGGACGAGATATTTTATCAGATATTAGTTTGACTATCAA
GAAGGGAGATAAAATTAGTCTTGTTGGCGTCAGCGGTTCGGGAAAAACAACACTTGCTAAGATGATTGTTCATTTTTATG
AGCCTTATCAAGGACAAATTCGCCTCAATGGAAATGACCTCAAGACAATTGATAAGAAAGTTCTTCGGCAATATATCAAC
TACTTACCTCAGCAAGCTTACATCTTTAGTGGTTCCATTCTAGACAACCTCACATTAGGAGCCGATCAAACAGTTTCTCA
ATCAGATATTCTTCGTGCCTGTGAAATTGCAGAAATTCGTTCAGATATCGAACAAATGCCCATGGGATACCAGACAGAAT
TGTCTGACGGAGCTGGATTATCTGGTGGACAAAAGCAACGAATTACACTTGCACGCGCTCTGCTGACGAAATCTCCCATT
CTCATTTTAGATGAAGCAACGAGTGGATTAGATGTTCTAACAGAGAAAAAAGTCATTGATAATCTCATGAAATTACCCGA
CAAAACCATTATTTTTGTTGCTCATCACCTCAGCATTTCAAAGCGTACAAATCAGATTATTGTCCTTGACCAAGGAAAAG
TGATTGAAACTGGTTCTCATACTGAATTGATAGGAAGAAAAGGTTTTTATTATCATCTATTTAATAAATAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(5-141)

ABC transporter (ABC_tran)

(499-648)

ABC transporter transmembrane region (ABC_membrane)

(167-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.355

99.022

0.716
  comA Streptococcus mitis NCTC 12261

66.667

100

0.668
  comA Streptococcus mitis SK321

66.248

100

0.663
  comA Streptococcus gordonii str. Challis substr. CH1

66.109

100

0.662
  comA Streptococcus pneumoniae D39

65.83

100

0.659
  comA Streptococcus pneumoniae R6

65.83

100

0.659
  comA Streptococcus pneumoniae Rx1

65.83

100

0.659
  comA Streptococcus pneumoniae TIGR4

65.411

100

0.655

Multiple sequence alignment