Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RN86_RS04365 Genome accession   NZ_CP012648
Coordinates   877569..878060 (+) Length   163 a.a.
NCBI ID   WP_046164707.1    Uniprot ID   A0A0F5MML9
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 856211..879902 877569..878060 within 0


Gene organization within MGE regions


Location: 856211..879902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS04240 (RN86_04235) - 856211..856414 (+) 204 WP_046164722.1 helix-turn-helix transcriptional regulator -
  RN86_RS11460 - 856411..856575 (+) 165 WP_082730221.1 hypothetical protein -
  RN86_RS04245 (RN86_04240) - 856585..857019 (+) 435 WP_046164721.1 hypothetical protein -
  RN86_RS04250 (RN86_04245) - 857073..858557 (-) 1485 WP_053794892.1 DUF1846 domain-containing protein -
  RN86_RS04255 (RN86_04250) ssbB/cilA 858736..859131 (-) 396 WP_046164720.1 single-stranded DNA-binding protein Machinery gene
  RN86_RS04260 (RN86_04255) ytpR 859195..859821 (-) 627 WP_046164719.1 YtpR family tRNA-binding protein -
  RN86_RS04265 (RN86_04260) - 859838..860155 (-) 318 WP_046164718.1 thioredoxin family protein -
  RN86_RS04270 (RN86_04265) - 860155..860439 (-) 285 WP_053794333.1 DUF4651 domain-containing protein -
  RN86_RS04275 (RN86_04270) pepA 860620..861687 (+) 1068 WP_053794334.1 glutamyl aminopeptidase -
  RN86_RS04280 (RN86_04275) - 861936..862922 (+) 987 WP_125377546.1 substrate-binding domain-containing protein -
  RN86_RS04285 (RN86_04280) - 862922..864235 (+) 1314 WP_046164715.1 sensor histidine kinase -
  RN86_RS04290 (RN86_04285) - 864228..864911 (+) 684 WP_002896732.1 response regulator transcription factor -
  RN86_RS04295 (RN86_04290) - 864908..866191 (+) 1284 WP_053794335.1 sugar ABC transporter substrate-binding protein -
  RN86_RS04300 (RN86_04295) - 866408..866845 (+) 438 WP_053794336.1 PTS fructose transporter subunit IIA -
  RN86_RS04305 (RN86_04300) - 866866..867360 (+) 495 WP_008810035.1 PTS sugar transporter subunit IIB -
  RN86_RS04310 (RN86_04305) - 867391..868242 (+) 852 WP_008810034.1 PTS sugar transporter subunit IIC -
  RN86_RS04315 (RN86_04310) - 868244..869074 (+) 831 WP_048777245.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  RN86_RS04320 (RN86_04315) - 869086..869376 (+) 291 WP_046164712.1 hypothetical protein -
  RN86_RS04325 (RN86_04320) - 869779..871752 (+) 1974 WP_046164711.1 ABC transporter substrate binding protein -
  RN86_RS04330 (RN86_04325) - 871752..872555 (+) 804 WP_046164710.1 ATP-binding cassette domain-containing protein -
  RN86_RS04335 (RN86_04330) groES 872716..872997 (+) 282 WP_012130907.1 co-chaperone GroES -
  RN86_RS04340 (RN86_04335) groL 873020..874642 (+) 1623 WP_045634142.1 chaperonin GroEL -
  RN86_RS04345 (RN86_04340) - 874766..875524 (+) 759 WP_045634141.1 epoxyqueuosine reductase QueH -
  RN86_RS04350 (RN86_04345) - 875618..876439 (-) 822 WP_046164708.1 PrsW family glutamic-type intramembrane protease -
  RN86_RS04355 (RN86_04350) folE 876487..877050 (-) 564 WP_008810025.1 GTP cyclohydrolase I FolE -
  RN86_RS04360 (RN86_04355) rpsF 877262..877552 (+) 291 WP_002896497.1 30S ribosomal protein S6 -
  RN86_RS04365 (RN86_04360) ssb 877569..878060 (+) 492 WP_046164707.1 single-stranded DNA-binding protein Machinery gene
  RN86_RS04370 (RN86_04365) rpsR 878099..878338 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  RN86_RS04375 (RN86_04370) - 878392..879048 (+) 657 WP_080998581.1 TetR/AcrR family transcriptional regulator -
  RN86_RS04380 (RN86_04375) - 879189..879902 (+) 714 WP_046164705.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18183.90 Da        Isoelectric Point: 5.2060

>NTDB_id=156079 RN86_RS04365 WP_046164707.1 877569..878060(+) (ssb) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAQSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=156079 RN86_RS04365 WP_046164707.1 877569..878060(+) (ssb) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTTAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTTGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGATAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGCTATACTCCAAATAACTTTGGCGGTAATGCAGCACAAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5MML9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment