Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   RN86_RS03360 Genome accession   NZ_CP012648
Coordinates   686911..688560 (-) Length   549 a.a.
NCBI ID   WP_053794282.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 681911..693560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS03345 (RN86_03340) rpsD 682205..682816 (+) 612 WP_008810013.1 30S ribosomal protein S4 -
  RN86_RS03350 (RN86_03345) comA 683271..685424 (+) 2154 WP_053794280.1 peptide cleavage/export ABC transporter ComA Regulator
  RN86_RS03355 (RN86_03350) comB 685434..686792 (+) 1359 WP_053794281.1 competence pheromone export protein ComB Regulator
  RN86_RS03360 (RN86_03355) lytF 686911..688560 (-) 1650 WP_053794282.1 GBS Bsp-like repeat-containing protein Regulator
  RN86_RS03365 (RN86_03360) purD 688805..690064 (+) 1260 WP_053794283.1 phosphoribosylamine--glycine ligase -
  RN86_RS03370 (RN86_03365) - 690124..691317 (+) 1194 WP_053794284.1 ATP-grasp domain-containing protein -
  RN86_RS03375 (RN86_03370) purE 691337..691825 (+) 489 WP_053794285.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RN86_RS03380 (RN86_03375) purK 691812..692903 (+) 1092 WP_053794286.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RN86_RS03385 (RN86_03380) - 692905..693168 (+) 264 WP_080998609.1 hypothetical protein -
  RN86_RS03390 (RN86_03385) - 693189..693416 (+) 228 WP_053794288.1 hypothetical protein -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 60355.04 Da        Isoelectric Point: 9.4782

>NTDB_id=156063 RN86_RS03360 WP_053794282.1 686911..688560(-) (lytF) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKKYKNFLLLSATLLTSLSAPLAAANEQFSPSQLTAMTSEVSVQLEGQTAIVQYQPTAAQESYPIQHAIWSEEGGQDDIV
WYPANQSTTRIDLSQHKGQGKFHIETYLNVNGVKYHLSSKSVFLNKPVQSAEKNVPEQQNSTSSNNATPQAPAEPKPTNP
APSPAPAPATNRVENPRNSYQKVEERNKSLPPQKVADPKATPPQAKPSNNKPLQASAARVPAEPVRDSKPLISITNINKG
NGTYTVRVQESPYSKRIKSVQVPIWSTANQSNLKWYEASQTGNGSFSVQFDIRNHQQLYGNYINHVYITYEDGSRAGYVA
ENVNLPQPAPQPLTPSLQVVHKGQSNYQVILQNSFGDGHILFPIWSDINGQDDLRWYTANSLGNGRYSLDFNANNHIGDG
LYHVHVYRQSGGKVTGVMASNFQVTRPTVAVRKPLNHTSDPSNTYPIGECTWGAKALAPWAGNWWGNGGDWAASARRAGF
RVGSTPQVGAIACWTDGGYGHVGVVTHVDSHKRIQIQESNYAGQRYIANFRGWFDPTIAQGTVSYIYPN

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=156063 RN86_RS03360 WP_053794282.1 686911..688560(-) (lytF) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAAAAATACAAAAATTTCTTACTGCTTTCAGCAACCTTGTTGACCTCACTATCCGCTCCCTTAGCTGCAGCGAATGA
ACAGTTTAGCCCATCCCAGCTGACGGCTATGACCAGCGAAGTTTCCGTTCAGCTTGAAGGACAAACAGCGATTGTTCAGT
ACCAACCGACCGCTGCGCAGGAATCTTATCCCATCCAACATGCCATCTGGTCTGAGGAGGGTGGCCAAGACGATATTGTC
TGGTATCCAGCTAATCAAAGCACGACCAGGATTGACTTGTCTCAGCACAAGGGCCAGGGCAAATTTCACATCGAGACTTA
TCTCAATGTGAATGGTGTTAAATACCACTTGAGTAGTAAATCGGTCTTTCTAAACAAGCCGGTTCAATCAGCCGAAAAAA
ATGTCCCTGAACAGCAAAATAGCACCTCGTCTAACAATGCTACACCGCAAGCTCCTGCTGAGCCAAAGCCAACTAACCCA
GCTCCTTCTCCAGCTCCGGCCCCCGCGACCAATAGAGTTGAAAATCCTCGGAACTCCTATCAAAAAGTCGAAGAGCGAAA
CAAATCTCTTCCTCCTCAAAAGGTAGCTGACCCAAAGGCGACGCCCCCTCAGGCAAAGCCAAGCAATAACAAACCTCTGC
AAGCTTCAGCTGCTAGAGTGCCCGCAGAGCCTGTCAGAGACAGCAAGCCACTCATCAGTATTACCAACATTAATAAGGGA
AATGGGACCTATACCGTAAGGGTCCAAGAAAGTCCTTATTCTAAGAGAATTAAAAGTGTGCAGGTGCCTATTTGGAGCAC
CGCTAATCAAAGTAATCTTAAATGGTACGAGGCTTCACAAACAGGCAACGGAAGCTTTTCTGTTCAATTCGACATCCGAA
ATCACCAGCAGCTTTACGGCAACTATATCAATCACGTCTACATTACCTATGAGGACGGTAGCCGAGCTGGCTATGTCGCT
GAAAATGTCAATCTTCCTCAGCCTGCACCCCAGCCACTAACTCCGAGTCTGCAAGTGGTTCATAAAGGTCAATCAAACTA
TCAAGTTATCTTACAAAATAGTTTCGGTGACGGCCATATTCTCTTCCCCATCTGGTCAGATATTAATGGCCAAGACGACC
TCCGCTGGTATACAGCCAATTCTCTTGGTAATGGGCGCTATTCGTTAGATTTCAACGCCAACAATCATATCGGTGACGGT
CTCTATCATGTCCATGTCTATCGACAATCTGGCGGGAAAGTAACTGGGGTCATGGCCTCTAATTTTCAAGTGACACGCCC
AACAGTAGCTGTGAGAAAACCTCTTAACCATACAAGCGACCCAAGTAACACCTACCCTATTGGCGAATGTACATGGGGCG
CCAAGGCTCTCGCTCCTTGGGCAGGAAACTGGTGGGGAAATGGTGGGGACTGGGCAGCCAGTGCTCGCCGAGCAGGATTC
CGTGTAGGATCCACACCTCAGGTCGGAGCCATTGCCTGCTGGACTGACGGTGGATACGGACATGTCGGCGTCGTCACGCA
TGTTGATTCACATAAGCGTATCCAAATTCAGGAATCCAACTACGCTGGACAGCGCTATATCGCTAATTTCCGTGGCTGGT
TTGACCCAACCATCGCTCAGGGAACGGTTTCCTATATCTACCCAAATTAA

Domains

Predicted by InterproScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(64-113)

GBS Bsp-like repeat (GBS_Bsp-like)

(344-414)

GBS Bsp-like repeat (GBS_Bsp-like)

(234-319)

CHAP domain (CHAP)

(443-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

96.903

100

0.969
  lytF Streptococcus gordonii str. Challis substr. CH1

94.9

100

0.949

Multiple sequence alignment