Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RN86_RS00075 Genome accession   NZ_CP012648
Coordinates   6632..7297 (-) Length   221 a.a.
NCBI ID   WP_053794066.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632..12297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS00070 (RN86_00070) raiA 6005..6547 (-) 543 WP_012000104.1 ribosome-associated translation inhibitor RaiA -
  RN86_RS00075 (RN86_00075) comFC/cflB 6632..7297 (-) 666 WP_053794066.1 ComF family protein Machinery gene
  RN86_RS00080 (RN86_00080) comFA/cflA 7294..8595 (-) 1302 WP_046165173.1 DEAD/DEAH box helicase Machinery gene
  RN86_RS00085 (RN86_00085) - 8651..9283 (+) 633 WP_046165172.1 YigZ family protein -
  RN86_RS00090 (RN86_00090) cysK 9381..10310 (+) 930 WP_046165171.1 cysteine synthase A -
  RN86_RS00095 (RN86_00095) - 10345..10731 (-) 387 WP_012000099.1 S1 RNA-binding domain-containing protein -
  RN86_RS00100 (RN86_00100) - 10728..12131 (-) 1404 WP_053794067.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25894.86 Da        Isoelectric Point: 8.4479

>NTDB_id=156045 RN86_RS00075 WP_053794066.1 6632..7297(-) (comFC/cflB) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MRQCLLCLSLLEEQLNFIDLLQLKRKENDVCQECLNTFEKIPEEHCPSCYKAGDKNLCQDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSIRKELKKYQSYTILNLPLSESKMKTRGFNQVSGLLEVAQIPYQELLKKKESQTQS
SKSRKERLENTGNFYMIENTKIPQKILLVDDIYTTGATLQDAKVTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=156045 RN86_RS00075 WP_053794066.1 6632..7297(-) (comFC/cflB) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAGACAATGTCTACTCTGCTTATCCCTATTAGAAGAGCAGTTAAATTTTATAGATTTATTACAATTAAAAAGAAAAGA
AAATGACGTTTGTCAAGAATGCTTAAATACCTTCGAAAAAATTCCAGAAGAACATTGTCCAAGCTGTTATAAAGCTGGGG
ACAAAAACTTGTGCCAAGATTGTCAGTACTGGCAGGAAAGAGGGTTAGAAGTGGCTCATAAAAGTTTGTACACTTATAAT
AAGGCTATGAAAGACTATTTTAGTCGTTACAAATTTCAAGGAGATTACCTATTAAGAAATGTGTTTGCCCTAAGTATAAG
AAAAGAATTAAAAAAATACCAAAGTTACACAATTTTAAACCTTCCTTTAAGTGAAAGTAAGATGAAAACAAGAGGATTCA
ATCAAGTGTCTGGATTGCTTGAAGTTGCACAGATACCTTATCAAGAACTATTAAAGAAAAAAGAAAGCCAGACTCAGTCT
AGTAAAAGCAGAAAAGAGAGATTAGAAAACACAGGTAATTTTTATATGATTGAAAATACGAAAATCCCCCAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGTGCAACCTTACAGGATGCAAAAGTGACATTATTTGAAAACGGAGCGAAAGAAA
TCATGACATTTTCACTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

50.228

99.095

0.498
  comFC/cflB Streptococcus mitis NCTC 12261

50.228

99.095

0.498
  comFC/cflB Streptococcus pneumoniae Rx1

49.772

99.095

0.493
  comFC/cflB Streptococcus pneumoniae D39

49.772

99.095

0.493
  comFC/cflB Streptococcus pneumoniae R6

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis SK321

49.315

99.095

0.489

Multiple sequence alignment