Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   RN86_RS00080 Genome accession   NZ_CP012648
Coordinates   7294..8595 (-) Length   433 a.a.
NCBI ID   WP_046165173.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2294..13595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS00070 (RN86_00070) raiA 6005..6547 (-) 543 WP_012000104.1 ribosome-associated translation inhibitor RaiA -
  RN86_RS00075 (RN86_00075) comFC/cflB 6632..7297 (-) 666 WP_053794066.1 ComF family protein Machinery gene
  RN86_RS00080 (RN86_00080) comFA/cflA 7294..8595 (-) 1302 WP_046165173.1 DEAD/DEAH box helicase Machinery gene
  RN86_RS00085 (RN86_00085) - 8651..9283 (+) 633 WP_046165172.1 YigZ family protein -
  RN86_RS00090 (RN86_00090) cysK 9381..10310 (+) 930 WP_046165171.1 cysteine synthase A -
  RN86_RS00095 (RN86_00095) - 10345..10731 (-) 387 WP_012000099.1 S1 RNA-binding domain-containing protein -
  RN86_RS00100 (RN86_00100) - 10728..12131 (-) 1404 WP_053794067.1 Cof-type HAD-IIB family hydrolase -
  RN86_RS00105 (RN86_00105) - 12219..12851 (-) 633 WP_046165169.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49575.54 Da        Isoelectric Point: 8.2050

>NTDB_id=156046 RN86_RS00080 WP_046165173.1 7294..8595(-) (comFA/cflA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MLELQDCLGRIFTKEQLPPELLKKAKRLSSIFEKKGELFCSRCYSQIDKERYLLPIGAYYCRECILLGRVSSDEDLYFFP
QESFPFISSLKWLGQLTEYQERVSKGLLEGVQNKQDTLVHAVTGAGKTEMIYQVVAQVLDQGGAVCIASPRIDVCLELYR
RLKEDFSCDISLLHGESDPYSRSPLVIATTHQLLKFYQAFDLLIVDEVDAFPYVDNPVLYHAVEQAVKNEGTTIFLTATS
TDELDKKVQKGILKRLSLPRRFHGNPLILPQKIWLYDLNKDLQREKLPAKLVKYLRKQRKTKFPLLIFASEIKKGQEIKQ
VLQKYFPEENVGFVASTTENRLEIVQDFRDKKISILVTTTILERGVTFPCVDVIVLEANHRLFTRSALVQIGGRVGRSME
RPTGDLLFFHDGTNIQIEKAINEIKAMNREAGL

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=156046 RN86_RS00080 WP_046165173.1 7294..8595(-) (comFA/cflA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGTTAGAATTGCAAGATTGTTTAGGGCGAATTTTTACTAAAGAACAGTTACCTCCTGAACTACTTAAGAAAGCTAAAAG
ACTATCATCAATTTTTGAAAAAAAGGGAGAACTCTTTTGTTCTCGCTGCTACAGTCAGATTGATAAGGAAAGATATTTAT
TGCCAATTGGTGCATATTATTGTAGAGAATGCATTCTTCTAGGGAGAGTGAGTAGTGACGAAGATCTTTATTTTTTTCCA
CAAGAGTCTTTTCCTTTTATATCGAGTTTGAAATGGCTTGGCCAATTGACAGAATATCAGGAAAGAGTTTCTAAAGGGTT
ACTTGAAGGAGTACAAAATAAGCAGGATACTTTAGTCCACGCTGTAACTGGAGCAGGAAAAACAGAGATGATATATCAAG
TGGTTGCTCAGGTGTTAGATCAAGGAGGTGCTGTCTGTATAGCTAGTCCTCGGATAGATGTCTGTTTGGAACTTTACCGG
CGTTTAAAAGAAGATTTTTCATGTGATATTTCCCTATTGCATGGGGAGTCCGACCCCTATTCACGCAGTCCCTTAGTGAT
TGCAACAACTCATCAATTACTAAAATTTTATCAGGCATTTGATTTACTCATTGTTGATGAGGTAGATGCCTTTCCTTATG
TAGATAACCCTGTGCTCTATCACGCTGTCGAGCAAGCAGTAAAAAATGAAGGAACTACAATATTCTTAACGGCTACGTCA
ACTGATGAGCTTGATAAAAAAGTTCAAAAAGGAATTTTGAAAAGATTAAGTTTGCCAAGACGCTTTCATGGAAATCCTTT
GATTCTCCCTCAAAAAATATGGCTTTATGATCTAAATAAAGACCTCCAAAGAGAAAAACTACCAGCCAAGTTAGTCAAGT
ATCTGAGAAAACAAAGAAAAACAAAATTCCCACTCTTAATTTTTGCTTCAGAAATTAAAAAAGGGCAGGAGATAAAGCAA
GTCTTACAAAAATATTTTCCAGAAGAAAATGTAGGTTTTGTAGCCTCTACAACGGAAAATAGATTAGAAATAGTGCAAGA
TTTTCGAGATAAAAAGATAAGTATATTAGTAACAACTACAATTTTAGAAAGAGGTGTTACTTTTCCATGTGTGGATGTAA
TTGTTTTGGAGGCTAACCATCGTCTCTTTACAAGGAGTGCTTTAGTACAAATTGGCGGGCGAGTGGGAAGAAGTATGGAA
CGACCGACAGGTGACTTACTATTTTTCCATGATGGCACTAATATACAGATAGAAAAAGCAATTAATGAAATTAAAGCAAT
GAACAGAGAGGCCGGATTATGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(97-245)

Helicase conserved C-terminal domain (Helicase_C)

(289-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

68.925

98.845

0.681
  comFA/cflA Streptococcus pneumoniae D39

68.925

98.845

0.681
  comFA/cflA Streptococcus pneumoniae R6

68.925

98.845

0.681
  comFA/cflA Streptococcus pneumoniae TIGR4

68.925

98.845

0.681
  comFA/cflA Streptococcus mitis SK321

68.31

98.383

0.672
  comFA/cflA Streptococcus mitis NCTC 12261

68.31

98.383

0.672
  comFA Lactococcus lactis subsp. cremoris KW2

53.553

90.993

0.487
  comFA Latilactobacillus sakei subsp. sakei 23K

39.907

99.538

0.397
  comFA Bacillus subtilis subsp. subtilis str. 168

39.32

95.15

0.374

Multiple sequence alignment