Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LLUC063_RS00340 Genome accession   NZ_CP015905
Coordinates   54759..55514 (+) Length   251 a.a.
NCBI ID   WP_058225802.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49759..60514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC063_RS00310 (LLUC063_0052) - 49818..50267 (+) 450 WP_003132211.1 GNAT family N-acetyltransferase -
  LLUC063_RS00315 (LLUC063_0053) - 50344..50586 (+) 243 WP_003132213.1 TM2 domain-containing protein -
  LLUC063_RS00320 (LLUC063_0054) - 50667..52289 (-) 1623 WP_058221496.1 SulP family inorganic anion transporter -
  LLUC063_RS00325 (LLUC063_0055) - 52499..53020 (+) 522 WP_003132215.1 GNAT family N-acetyltransferase -
  LLUC063_RS00335 (LLUC063_0056) - 53485..54660 (+) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  LLUC063_RS00340 (LLUC063_0057) recO 54759..55514 (+) 756 WP_058225802.1 DNA repair protein RecO Machinery gene
  LLUC063_RS00345 (LLUC063_0058) - 55628..56509 (+) 882 WP_058225803.1 Rgg/GadR/MutR family transcriptional regulator -
  LLUC063_RS00350 (LLUC063_0059) - 56741..57991 (+) 1251 WP_003132219.1 radical SAM/SPASM domain-containing protein -
  LLUC063_RS00355 (LLUC063_0060) - 57997..59232 (+) 1236 WP_003132221.1 MFS transporter -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28731.95 Da        Isoelectric Point: 5.9537

>NTDB_id=156029 LLUC063_RS00340 WP_058225802.1 54759..55514(+) (recO) [Lactococcus lactis subsp. lactis strain UC063]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECVFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=156029 LLUC063_RS00340 WP_058225802.1 54759..55514(+) (recO) [Lactococcus lactis subsp. lactis strain UC063]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTATATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGTATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.878

98.008

0.538

Multiple sequence alignment