Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RN80_RS03625 Genome accession   NZ_CP012646
Coordinates   704528..706495 (+) Length   655 a.a.
NCBI ID   WP_049544886.1    Uniprot ID   A0A0M4KGR4
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 699528..711495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03610 (RN80_03620) - 700537..701019 (-) 483 WP_000032562.1 S-ribosylhomocysteine lyase -
  RN80_RS03615 (RN80_03625) - 701114..702598 (-) 1485 WP_060627557.1 DUF1846 domain-containing protein -
  RN80_RS03620 (RN80_03630) - 702751..704361 (+) 1611 WP_060627559.1 glycoside hydrolase family 13 protein -
  RN80_RS03625 (RN80_03635) amiA3 704528..706495 (+) 1968 WP_049544886.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS03630 (RN80_03640) amiA3 706722..708680 (+) 1959 WP_060627561.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS03635 (RN80_03645) - 708870..710315 (+) 1446 WP_049544888.1 LCP family protein -
  RN80_RS09650 - 710322..710429 (+) 108 Protein_667 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72631.26 Da        Isoelectric Point: 5.1312

>NTDB_id=156007 RN80_RS03625 WP_049544886.1 704528..706495(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MQSKKWLLGAGVTLSAALLLAACGKSDKKADAPRSFSYVYAVDPSSLDYSVTSKSSTSDVIGNVVDGLLENDKYGNLVPS
LAEDWTVSTDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADAKSDGLSLIEKSIKGLEAYVSGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNATGKDYGAPTPSSILYNGPYFLKSLISKSVIEYEKNPNYWDK
ENVKIDNVKLTFYDGSDQESLIRSFATGAYNTARLFPNSSSFASTKEKYGDQIIYSPQEATSYYFTFNVNRQSYNKTAKT
DEGQKLSTKEAMLNKNFRQAINFAFNRHAYTAQLNGEEGADKIIRNSLVPDNYVQVAGKTFGQLAQDELLKYGEQWKDVT
LTDGKDTIYNPTKAKSAFEKAKSELQAKGVSFPIHLDVPVEQTDVVAVQQTNSLKQSIEETLGTENVIIDVLQMTDNEKE
SITSQAKVPTQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVVAKVGLDEYKKLLDDAASETSNLD
KRYEKYAKAQAWVTDSSLLIPVASSGGSPMVSRTVPFTKAYSQVGIKGDPFIFKGMELQNDIVTTKEYDAAFKKWQKEKL
ESNAQYQKDLEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=156007 RN80_RS03625 WP_049544886.1 704528..706495(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGCAATCGAAAAAGTGGCTCTTAGGAGCGGGAGTGACCTTGAGTGCGGCCCTTCTTTTGGCAGCTTGTGGTAAAAGTGA
TAAGAAAGCAGATGCCCCGAGGAGCTTTTCTTATGTTTATGCAGTGGATCCGTCTTCCTTGGATTATAGCGTTACGAGTA
AAAGTTCTACTTCTGACGTGATTGGTAATGTTGTTGATGGTCTTTTAGAGAATGATAAATATGGGAATCTTGTTCCGTCT
TTAGCAGAGGATTGGACTGTTTCAACCGATGGTTTGACTTACACTTACAAACTTCGTAAGGGGGTGAAGTGGTATACTTC
TGAAGGAGAGGAGTATGCAGAAGTTAAGGCGCAGGATTTTGTTACAGGTCTGAAGCATGCAGCAGATGCTAAGTCAGATG
GTCTTTCTTTGATTGAAAAATCAATCAAAGGTTTGGAGGCTTATGTTAGTGGTGAGACCAATGATTTTTCAACTGTAGGT
GTTAAAGCTCTTGATGATTATACGGTAGAATATACCCTTAATAAACCAGAAAGTTTTTGGAACTCTAAAGTAACAACAGC
AACCATGCTCCCTGTAAATGAAGAATTTTTGAATGCAACAGGCAAGGATTACGGAGCGCCAACCCCATCAAGTATTCTTT
ACAATGGTCCATATTTTTTGAAATCTTTGATTTCTAAATCTGTGATTGAATATGAAAAAAATCCTAACTATTGGGATAAG
GAAAATGTCAAGATTGATAATGTAAAATTAACATTCTATGACGGATCAGATCAAGAATCCCTTATCCGTAGTTTCGCTAC
AGGAGCATATAATACAGCGAGACTTTTCCCAAATAGTTCAAGTTTTGCTTCTACCAAAGAGAAATATGGAGATCAGATTA
TTTATAGCCCTCAGGAAGCAACTAGTTATTACTTTACTTTTAACGTAAATCGTCAATCATATAATAAAACAGCCAAGACA
GATGAAGGACAAAAGCTTTCTACAAAAGAAGCCATGCTGAATAAAAATTTCCGTCAAGCAATTAATTTTGCCTTCAATCG
CCACGCCTATACAGCTCAATTAAACGGTGAAGAGGGTGCGGATAAGATTATTCGTAATAGTCTAGTGCCAGATAATTACG
TTCAAGTAGCTGGGAAGACCTTCGGACAGTTGGCTCAGGATGAACTACTGAAATATGGAGAACAGTGGAAAGATGTGACT
CTCACAGATGGTAAGGATACAATTTACAATCCAACAAAGGCCAAGTCTGCATTTGAAAAAGCGAAGTCAGAATTGCAAGC
TAAGGGAGTGAGTTTCCCGATTCATCTAGATGTGCCAGTAGAACAGACAGATGTAGTTGCGGTGCAACAAACCAATTCGC
TAAAACAATCAATTGAAGAAACGCTTGGAACGGAGAATGTGATTATAGATGTTCTTCAAATGACAGATAATGAGAAGGAA
AGTATTACTTCTCAAGCTAAAGTTCCAACCCAAAAAGATTATGATTTGAACGGAACAGGTTGGGGACCAGATTACCAAGA
TCCAGCAACCTATCTCAATATTTTAGATGCTAAGAAGGGTTCTGCCTTGAAACATCTAGGTATAACAAAGGGCAAGGATC
CTGAAGTTGTGGCAAAAGTTGGCTTGGATGAATACAAGAAGCTCTTGGATGATGCGGCTTCTGAGACAAGTAATCTTGAT
AAACGATACGAAAAGTATGCTAAAGCACAGGCTTGGGTTACTGATAGTTCACTTCTTATTCCAGTTGCTTCTTCAGGGGG
CTCTCCTATGGTTAGTCGTACTGTTCCATTTACCAAAGCTTATTCACAGGTCGGTATTAAGGGGGATCCATTTATTTTTA
AAGGAATGGAACTTCAAAATGATATTGTGACAACTAAAGAGTATGATGCGGCCTTCAAAAAGTGGCAAAAGGAAAAACTG
GAATCGAATGCTCAGTATCAAAAGGATTTAGAAAAGCACATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4KGR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.504

100

0.528
  amiA Streptococcus salivarius strain HSISS4

52.28

100

0.525
  amiA3 Streptococcus thermophilus LMG 18311

52.049

100

0.524

Multiple sequence alignment