Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RN80_RS03630 Genome accession   NZ_CP012646
Coordinates   706722..708680 (+) Length   652 a.a.
NCBI ID   WP_060627561.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 701722..713680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03620 (RN80_03630) - 702751..704361 (+) 1611 WP_060627559.1 glycoside hydrolase family 13 protein -
  RN80_RS03625 (RN80_03635) amiA3 704528..706495 (+) 1968 WP_049544886.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS03630 (RN80_03640) amiA3 706722..708680 (+) 1959 WP_060627561.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS03635 (RN80_03645) - 708870..710315 (+) 1446 WP_049544888.1 LCP family protein -
  RN80_RS09650 - 710322..710429 (+) 108 Protein_667 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  RN80_RS03640 (RN80_03650) glf 710523..711626 (+) 1104 WP_060627563.1 UDP-galactopyranose mutase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72641.70 Da        Isoelectric Point: 4.9243

>NTDB_id=156008 RN80_RS03630 WP_060627561.1 706722..708680(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MTTKKRILSAGLTVAAALLLTACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTTDE
QKKSTETTVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSYINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGTDNIVIDVQQLSTDDFNNVA
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAQEDKAKIASLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKTKWEQESKKAI
EKAQKEAENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=156008 RN80_RS03630 WP_060627561.1 706722..708680(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGACTACAAAAAAGCGTATCCTTAGTGCAGGTCTGACTGTTGCAGCTGCCTTGCTGTTAACTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAACCCAACTACATTTAACTACTTATTAGACTACTACGCTGATA
ATACAGCTATTATTACTAACCTAGTTGATGGTTTGCTTGAAAATGACAACCATGGGAACCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCGAGCGACGGTCTGACTTATACCTATAAATTGAGAAAAGATGCCAAATGGTTCACGGCTGATGGTGA
AGAATATGCCCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAGTATGCAGTGGACAATAAATCCCAGGCCATTGACT
TGATTCAAAACTCGATTAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGATTTCTCTAAGGTTGGGGTGAAGGCC
ATTGACGACCAGACTGTTGAGTATACTTTGGCACGCCCAGAACCTTACTGGAACTCAAAAACAACGAATAGTATTCTTTT
CCCGGTAAATGAAGAGTTTTTAAATTCAAAAGGGAAAGATTTTGGTACCCTATCTCCAGATAGCATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCTATCGAGTATGTGAAGAATCCGCATTACTATGATCATGACAAAGTA
TCGATTGAACACGTGAAATTGGCCTATTTTGATGGTTCAGACCAAGAATTGACCATCCGTAACTTTGAAAGTGGAGCTTA
TTCTATCGCTGGGGTTTATCCGAATAGTTCTAACTTTGCTAAGACCAAGGAGAAATATAAGGATAATATCGTCTATAGCT
TGCAGGACAAGACTTCTTGGTATTTCAATTTCAACGTCAACCGTAAGGCCTACAATCACACTGCTAAAACGACAGATGAA
CAGAAGAAGTCAACTGAGACAACTGTCTTGAACAAAAACTTCCGCCAAGCAGTGAACTTTGCCTTGGACCGCACAGCCTA
TTCTGCTCAGTCAAATGGGGAAGAAGCAGCTAGCAAGACCCTTCGTAACACCCTAGTGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACTTTTGGAGAAGTAGTTGCTTCTAAATTGGTCAACTATGGCACAGAATGGTCATATATTAACTTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCTATTCACTTGGATGTGGCTGTTGATCAGACAAGTAAAAATGCTGTGACAGGAATGAACTCAGTTAAGCAGA
CCCTTGAGTCAGTTTTGGGTACTGATAACATTGTCATTGATGTTCAACAACTTTCAACGGATGATTTTAATAATGTAGCC
TTTTTAGCGCCAACACCAGCTGATCGTGACTATGATTTGAACTTTGATGGTTGGGTAGGTGACTACCAAGATCCGTCAAC
TTATCTTAATCCTTTCAATGCAGAGGATGGATTCTACCTCAAGATTTTTGGTTTAGATGCTCAAGAAGATAAAGCTAAGA
TTGCTAGCTTGGGGCTTGATACTTACACCAAGATGCTCAAAGATGCAGATAGTGAAAATAAAGATGTAGCCAAACGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCCATGTCAAGTGGTGGAACAGCTTC
TGTAACCAAAGTAACGCCATTTACAAGAGGCTATTCACTGGTCGGCATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAACTAAACAGTATGAAGAAGCCAAGACCAAATGGGAGCAAGAAAGTAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAATCATGTCAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.228

100

0.506
  amiA Streptococcus salivarius strain HSISS4

49.848

100

0.502
  amiA3 Streptococcus thermophilus LMG 18311

49.772

100

0.502

Multiple sequence alignment