Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RN80_RS02015 Genome accession   NZ_CP012646
Coordinates   380573..381331 (-) Length   252 a.a.
NCBI ID   WP_060627320.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 375573..386331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS01990 (RN80_02000) pth 375603..376172 (-) 570 WP_000163938.1 aminoacyl-tRNA hydrolase -
  RN80_RS01995 (RN80_02005) ychF 376245..377360 (-) 1116 WP_001218721.1 redox-regulated ATPase YchF -
  RN80_RS02000 (RN80_02010) - 377445..377639 (-) 195 WP_000285186.1 DUF951 domain-containing protein -
  RN80_RS02005 (RN80_02015) dnaN 377704..378840 (-) 1137 WP_060627318.1 DNA polymerase III subunit beta -
  RN80_RS02010 (RN80_02020) dnaA 378999..380360 (-) 1362 WP_060627319.1 chromosomal replication initiator protein DnaA -
  RN80_RS02015 (RN80_02025) spo0J 380573..381331 (-) 759 WP_060627320.1 ParB/RepB/Spo0J family partition protein Regulator
  RN80_RS02020 (RN80_02030) htrA 381389..382570 (-) 1182 WP_060627321.1 S1C family serine protease Regulator
  RN80_RS02025 (RN80_02035) rlmH 382754..383233 (+) 480 WP_060627322.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RN80_RS02035 (RN80_02045) comC/comC2 383515..383637 (+) 123 WP_060627323.1 competence-stimulating peptide ComC Regulator
  RN80_RS02040 (RN80_02050) comD/comD1 383650..384975 (+) 1326 WP_060627324.1 competence system sensor histidine kinase ComD Regulator
  RN80_RS02045 (RN80_02055) comE 384972..385724 (+) 753 WP_000866073.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29125.49 Da        Isoelectric Point: 8.3000

>NTDB_id=155988 RN80_RS02015 WP_060627320.1 380573..381331(-) (spo0J) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MEKFEMISITDIQKNPYQPRKEFDGEKLHELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIYEDISVRKLESLLTEKKQKKLQKTNHFIQNEEEQLKKLLGLDIEIKLSKKDNGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=155988 RN80_RS02015 WP_060627320.1 380573..381331(-) (spo0J) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCTCGAAAAGAATTTGATGGAGAAAA
ACTACATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTAAGGTCTATCCCAGCTGTTGTTAAACAG
CTTTCAGATCAAGAGATGATGGTCCAGTCCATCATTGAAAATTTGCAAAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTTGTAGAGAAAGGATTTACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCTTATATCA
GCAACTCTATTCGCTTGCTGTCCTTGCCAGAACAGATCCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCTCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATATATGAAGACATTTCTGTAAGGAA
ATTAGAATCTCTTCTGACAGAGAAAAAACAAAAGAAACTTCAAAAAACGAATCATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAACTACTCGGATTAGATATAGAAATAAAATTGTCTAAAAAAGACAATGGAAAAATTATTATTTCTTTTTCAAAT
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.012

100

0.492

Multiple sequence alignment