Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   RN80_RS01910 Genome accession   NZ_CP012646
Coordinates   359641..359877 (-) Length   78 a.a.
NCBI ID   WP_060627312.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 354641..364877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS01880 (RN80_01895) radA 354935..356296 (-) 1362 WP_080998473.1 DNA repair protein RadA Machinery gene
  RN80_RS01885 (RN80_01900) - 356310..356867 (-) 558 WP_172672628.1 histidine phosphatase family protein -
  RN80_RS01890 (RN80_01905) - 356827..357270 (-) 444 WP_000701987.1 dUTP diphosphatase -
  RN80_RS01900 (RN80_01910) tadA 357457..357924 (-) 468 WP_060627311.1 tRNA adenosine(34) deaminase TadA -
  RN80_RS01905 (RN80_01915) - 358124..359410 (-) 1287 WP_001832534.1 adenylosuccinate synthase -
  RN80_RS01910 (RN80_01920) comW 359641..359877 (-) 237 WP_060627312.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9914.37 Da        Isoelectric Point: 6.2061

>NTDB_id=155986 RN80_RS01910 WP_060627312.1 359641..359877(-) (comW) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MLQNIYDQMTDFYDSIEEEYATFFGNSWDWEHFHFKFLIYYLVRYRIVSYRDFIVYHYRVAYRLYLEKLIMKQGFVAC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=155986 RN80_RS01910 WP_060627312.1 359641..359877(-) (comW) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGCTACAAAATATTTATGATCAGATGACTGATTTCTATGACAGTATCGAAGAAGAGTATGCTACTTTCTTTGGTAATAG
TTGGGACTGGGAACATTTTCATTTTAAGTTTTTGATTTATTATCTTGTCCGATATCGTATTGTGAGCTATCGGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGATAATGAAACAAGGTTTTGTTGCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis SK321

84.615

100

0.846
  comW Streptococcus mitis NCTC 12261

84.416

98.718

0.833
  comW Streptococcus pneumoniae Rx1

73.077

100

0.731
  comW Streptococcus pneumoniae D39

73.077

100

0.731
  comW Streptococcus pneumoniae R6

73.077

100

0.731
  comW Streptococcus pneumoniae TIGR4

73.077

100

0.731

Multiple sequence alignment