Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RN80_RS01880 Genome accession   NZ_CP012646
Coordinates   354935..356296 (-) Length   453 a.a.
NCBI ID   WP_080998473.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 349935..361296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS10200 (RN80_01870) - 349990..350970 (-) 981 WP_049544006.1 N-acetylmuramoyl-L-alanine amidase family protein -
  RN80_RS09900 (RN80_01875) - 351345..352292 (-) 948 Protein_331 Rpn family recombination-promoting nuclease/putative transposase -
  RN80_RS01865 (RN80_01880) - 352411..353379 (-) 969 WP_033682853.1 ribose-phosphate diphosphokinase -
  RN80_RS01870 (RN80_01885) - 353525..354340 (-) 816 WP_060627309.1 PrsW family intramembrane metalloprotease -
  RN80_RS01875 (RN80_01890) - 354365..354862 (-) 498 WP_004240973.1 beta-class carbonic anhydrase -
  RN80_RS01880 (RN80_01895) radA 354935..356296 (-) 1362 WP_080998473.1 DNA repair protein RadA Machinery gene
  RN80_RS01885 (RN80_01900) - 356310..356867 (-) 558 WP_172672628.1 histidine phosphatase family protein -
  RN80_RS01890 (RN80_01905) - 356827..357270 (-) 444 WP_000701987.1 dUTP diphosphatase -
  RN80_RS01900 (RN80_01910) tadA 357457..357924 (-) 468 WP_060627311.1 tRNA adenosine(34) deaminase TadA -
  RN80_RS01905 (RN80_01915) - 358124..359410 (-) 1287 WP_001832534.1 adenylosuccinate synthase -
  RN80_RS01910 (RN80_01920) comW 359641..359877 (-) 237 WP_060627312.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49392.84 Da        Isoelectric Point: 6.5133

>NTDB_id=155985 RN80_RS01880 WP_080998473.1 354935..356296(-) (radA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTDMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITSPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=155985 RN80_RS01880 WP_080998473.1 354935..356296(-) (radA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGATGTCCTAACTG
TGGGTCTTGGTCTTCCTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAAAATGCGCGTGTGTCTTTAACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCTATCAACGTCAATCGAACCAAGACGGACATGGAGGAATTCAACCGTGTA
CTTGGAGGCGGAGTGGTACCGGGAAGTCTCGTTCTTATCGGTGGGGATCCTGGAATCGGGAAATCAACCCTTCTCCTACA
AGTTTCAACCCAGCTGTCTCAAGTTGGGACTGTTCTCTACGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGTTTGGGTGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGAGCTGAGGTGGAG
CGCATCCAACCAGACTTCCTCATTATTGACTCTATCCAGACCATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTGCGTGAAGTGACAGCTGAACTTATGCAGCTGGCCAAAACCAATAACATTGCCATATTTATCGTAGGGCATG
TAACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CATCATACCTTCCGTATTTTGAGGGCGGTCAAAAATCGTTTTGGTTCTACCAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGTTTGGTTGAGGTTCTCAATCCGAGTCAAGTTTTCTTAGAAGAGCGTTTGGATGGGGCGACTGGTTCTTCTATCG
TTGTGACTATGGAGGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTTACACCGACTATGTTTGGAAATGCCAAG
CGTACGACGACAGGACTTGATTTTAACCGTGCTAGTCTGATTATGGCTGTTTTGGAAAAACGGGCAGGTCTTCTCTTGCA
AAATCAGGATGCTTACCTAAAATCTGCTGGCGGTGTCAAATTGGATGAACCTGCCATTGACTTAGCTGTTGCTGTTGCCA
TTGCTTCGAGTTATAAAGACAAGCCTACCAATCCTCAGGAATGTTTTGTAGGAGAACTAGGTTTGACTGGAGAAATTCGG
CGCGTGAATCGTATCGAGCAGCGCATCAATGAAGCTGCTAAACTGGGTTTTACTAAAATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTTCGCCTAAGGAAATTCAGGTTATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(64-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.558

100

0.996
  radA Streptococcus pneumoniae D39

99.558

100

0.996
  radA Streptococcus pneumoniae R6

99.558

100

0.996
  radA Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radA Streptococcus mitis NCTC 12261

99.338

100

0.993
  radA Streptococcus mitis SK321

99.338

100

0.993
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631

Multiple sequence alignment