Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AN479_RS12120 Genome accession   NZ_CP012639
Coordinates   2586150..2586680 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain RSC-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2581150..2591680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN479_RS12110 (AN479_12060) - 2581909..2582715 (-) 807 WP_033651345.1 MipA/OmpV family protein -
  AN479_RS12115 (AN479_12065) uvrA 2583044..2585872 (-) 2829 WP_033644422.1 excinuclease ABC subunit UvrA -
  AN479_RS12120 (AN479_12070) ssb 2586150..2586680 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AN479_RS12125 (AN479_12075) - 2586766..2587782 (-) 1017 WP_230079587.1 cyclase family protein -
  AN479_RS12130 (AN479_12080) - 2587948..2588160 (-) 213 WP_033644427.1 DUF1471 domain-containing protein -
  AN479_RS12135 (AN479_12085) - 2588423..2589172 (-) 750 WP_046687892.1 3-oxoacyl-ACP reductase family protein -
  AN479_RS12140 (AN479_12090) bhsA 2589323..2589583 (-) 261 WP_042785456.1 multiple stress resistance protein BhsA -
  AN479_RS12145 (AN479_12095) - 2589779..2590222 (+) 444 WP_033644432.1 lipocalin-like domain-containing protein -
  AN479_RS12150 (AN479_12100) - 2590219..2590887 (+) 669 WP_060660198.1 glutathione S-transferase family protein -
  AN479_RS12155 (AN479_12105) - 2590935..2591342 (+) 408 WP_015379207.1 VOC family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=155924 AN479_RS12120 WP_004936793.1 2586150..2586680(+) (ssb) [Serratia marcescens strain RSC-14]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=155924 AN479_RS12120 WP_004936793.1 2586150..2586680(+) (ssb) [Serratia marcescens strain RSC-14]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAAGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCTGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAACAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment