Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AN401_RS19145 Genome accession   NZ_CP012621
Coordinates   4054818..4056329 (+) Length   503 a.a.
NCBI ID   WP_096780218.1    Uniprot ID   A0A291HUB7
Organism   Zobellella denitrificans strain F13-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4049818..4061329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN401_RS19130 (AN401_18870) - 4051596..4052516 (-) 921 WP_094040750.1 branched-chain amino acid transaminase -
  AN401_RS19135 (AN401_18875) ilvM 4052528..4052788 (-) 261 WP_094040749.1 acetolactate synthase 2 small subunit -
  AN401_RS19140 (AN401_18880) ilvG 4052785..4054434 (-) 1650 WP_096780217.1 acetolactate synthase 2 catalytic subunit -
  AN401_RS19145 (AN401_18885) comM 4054818..4056329 (+) 1512 WP_096780218.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AN401_RS19150 (AN401_18890) - 4056396..4056707 (+) 312 WP_094040746.1 hypothetical protein -
  AN401_RS19155 (AN401_18895) - 4056756..4057358 (-) 603 WP_094040745.1 thiol:disulfide interchange protein DsbA/DsbL -
  AN401_RS19160 (AN401_18900) - 4057399..4058367 (-) 969 WP_094040744.1 serine/threonine protein kinase -
  AN401_RS19165 (AN401_18905) ccoG 4058418..4059839 (-) 1422 WP_096780219.1 cytochrome c oxidase accessory protein CcoG -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53795.93 Da        Isoelectric Point: 7.9535

>NTDB_id=155800 AN401_RS19145 WP_096780218.1 4054818..4056329(+) (comM) [Zobellella denitrificans strain F13-1]
MSLAVVFARASLGVTAPLVTVEAHLANGLPAFNIVGLPETTVKEARDRVRSALLNSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALAVLAASGQVPADGLGRLEFLGELALTGELRPVRGALPAVLAARDSERQLVLPSGNGDEAGLISPCPALLAPHL
LAITAWLRSQGELAAPEPVGPSGDMEAADLSEVIGQEGGKRALEIAAAGEHNLLLLGPPGTGKSMLASRLPGLLPPMTEA
EALESAAVRSISGLGLDPSRWLRRPFRQPHHSASAVALVGGGGYPKPGEISLAHHGVLFLDEMTEFERRVLDALREPLET
GSVSISRAAHRVTFPARFQLIGAMNPSPCGHYEDGRSRSSSEQILRYLSKVSGPFLDRFDLSVEIPLLPPGELSRPRPPA
ESSAQVRDRVLAARARQLARAGKSNARLGTAELDRFCPLAREDAVFLEQALHRMKLSIRAWHKLIRVARTIADLADEPQI
ARSHLIEALGYRAMDKLLHRLQQ

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=155800 AN401_RS19145 WP_096780218.1 4054818..4056329(+) (comM) [Zobellella denitrificans strain F13-1]
ATGTCACTCGCCGTCGTTTTTGCCCGCGCCAGCCTGGGCGTTACCGCGCCGCTGGTCACCGTCGAAGCCCACCTGGCCAA
CGGCCTGCCGGCGTTCAACATCGTCGGCCTGCCGGAAACCACCGTCAAGGAAGCCCGGGACAGGGTGCGCAGCGCCCTGC
TCAATTCGGGTTTCGAGTTTCCCGCCAAGCGCATCACCGTCAACCTGGCCCCCGCCGATCTGCCCAAGGAAGGGGGCCGT
TTCGATCTGCCCATCGCCCTGGCCGTGCTGGCGGCCTCCGGCCAGGTACCCGCCGACGGTCTCGGCCGGCTGGAGTTTCT
GGGGGAGCTGGCCCTCACCGGCGAGCTGAGGCCGGTCCGGGGCGCCCTGCCCGCGGTGCTGGCCGCCCGGGACAGCGAGC
GGCAGCTGGTGCTGCCCAGCGGCAACGGTGACGAGGCGGGGCTTATCTCGCCCTGCCCGGCCCTGCTGGCGCCTCATTTG
CTGGCCATTACCGCCTGGTTGCGATCCCAGGGCGAGCTGGCCGCCCCGGAACCGGTCGGTCCGAGCGGGGACATGGAGGC
CGCCGACCTGAGCGAGGTAATAGGGCAGGAAGGGGGCAAGCGGGCACTGGAGATCGCCGCCGCCGGCGAGCACAACCTGC
TGCTGCTCGGCCCGCCGGGCACCGGCAAGAGCATGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGATGACCGAGGCG
GAAGCCCTGGAATCGGCCGCCGTGCGCTCCATCAGCGGCCTGGGGCTGGATCCCTCGCGCTGGCTGCGTCGCCCCTTCCG
GCAGCCGCACCATTCGGCCTCCGCCGTGGCCCTGGTCGGCGGTGGCGGCTATCCCAAACCCGGCGAAATTTCCCTGGCCC
ACCACGGGGTGCTCTTCCTCGACGAAATGACCGAGTTCGAACGACGGGTGCTGGATGCCCTGCGCGAACCGCTCGAAACC
GGCAGCGTGTCCATTTCCCGCGCCGCCCACAGGGTCACCTTCCCCGCCCGCTTCCAGCTGATCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTACGAGGACGGTCGCAGTCGCAGCTCTTCCGAGCAGATACTGCGCTACCTGAGCAAGGTTTCCGGCC
CCTTTCTCGACCGTTTCGATCTGTCGGTGGAGATCCCCCTGCTGCCGCCGGGCGAGCTCAGCCGCCCGCGCCCTCCCGCG
GAAAGCTCGGCACAGGTGCGTGACCGGGTACTGGCGGCCCGGGCCCGGCAATTGGCGCGGGCCGGCAAGAGCAATGCCCG
ACTCGGTACCGCCGAGCTGGACCGGTTTTGTCCCCTGGCCCGGGAAGATGCCGTCTTCCTGGAGCAGGCCCTGCACCGGA
TGAAGCTGTCGATCCGGGCCTGGCACAAACTGATCCGGGTGGCCAGGACCATCGCCGATCTGGCCGATGAACCCCAGATA
GCCCGATCCCATCTGATAGAAGCCCTGGGCTACAGGGCCATGGACAAGCTGCTGCACCGGCTGCAACAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291HUB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.233

100

0.612
  comM Haemophilus influenzae Rd KW20

59.369

100

0.598
  comM Vibrio campbellii strain DS40M4

59.96

99.801

0.598
  comM Glaesserella parasuis strain SC1401

57.791

100

0.583
  comM Legionella pneumophila str. Paris

48.29

98.807

0.477
  comM Legionella pneumophila strain ERS1305867

48.29

98.807

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.439

Multiple sequence alignment