Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMQ28_RS06880 Genome accession   NZ_CP012608
Coordinates   1458905..1460392 (+) Length   495 a.a.
NCBI ID   WP_053578981.1    Uniprot ID   A0A0M3RL70
Organism   Acinetobacter sp. TTH0-4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1453905..1465392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS06855 (AMQ28_06860) ribD 1454828..1455931 (-) 1104 WP_053578977.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AMQ28_RS06860 (AMQ28_06865) nrdR 1455942..1456400 (-) 459 WP_053578978.1 transcriptional regulator NrdR -
  AMQ28_RS06865 (AMQ28_06870) - 1456539..1457936 (-) 1398 WP_053578979.1 ammonium transporter -
  AMQ28_RS06870 (AMQ28_06875) glnK 1457995..1458333 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  AMQ28_RS06875 (AMQ28_06880) - 1458610..1458837 (+) 228 WP_053578980.1 accessory factor UbiK family protein -
  AMQ28_RS06880 (AMQ28_06885) comM 1458905..1460392 (+) 1488 WP_053578981.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AMQ28_RS06885 (AMQ28_06890) - 1460602..1461354 (-) 753 WP_053580268.1 TorF family putative porin -
  AMQ28_RS06895 (AMQ28_06900) - 1462441..1463754 (+) 1314 WP_053578983.1 OprD family outer membrane porin -
  AMQ28_RS06900 (AMQ28_06905) ppa 1463851..1464375 (-) 525 WP_053578984.1 inorganic diphosphatase -
  AMQ28_RS06905 (AMQ28_06910) - 1464504..1464902 (-) 399 WP_053578985.1 MAPEG family protein -
  AMQ28_RS06910 (AMQ28_06915) - 1465009..1465392 (+) 384 WP_053578986.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54632.74 Da        Isoelectric Point: 7.7414

>NTDB_id=155756 AMQ28_RS06880 WP_053578981.1 1458905..1460392(+) (comM) [Acinetobacter sp. TTH0-4]
MSFAKIFTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQIPENATDNLEFIGELALDGQLRSVTGILSIAIACQQSGHQLILPKQNAQEASQLPQFEVFAAQHL
KDVCEHLSKQQPIPQYQVQMPIAVDQYQCDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVARIYSVANTVHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLIAAMNPCPCGYAFNQDVRCQCSADAIKRYQNRISGPLLDRIDLHLDVPPLQATELQDTTPVE
NSQTVRERVIQAYQRQIQRQNCLNHALSPKQLEQYVVLDPQAQKIIEMAQQRLNLSARAYHRVLRVARSIADLSEHSEIQ
TQHLTEALSYRAQQN

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=155756 AMQ28_RS06880 WP_053578981.1 1458905..1460392(+) (comM) [Acinetobacter sp. TTH0-4]
ATGTCATTTGCGAAAATTTTTACGCGGGGTCTATTGGGGCTACATGCCCCATTGATTGAAGTTGAAGTTCATGTCAGTCA
AGGGCTGCCTTCTTTAACGATTGTGGGTCTGGCCGAAGCAGCGGTACGTGAAAGTAAAGATCGTGTACGATCCGCTATTA
TTAACAGTGGGTTTCAGTTTCCGACCAAACGTCTAACCATCAACTTAGCGCCCGCAGACTTACCCAAAGATGGCTCACGG
CTTGATTTACCCATTGCATTGGGTATTTTAATAGCATCGGGACAAATTCCAGAAAATGCCACAGACAATTTAGAATTTAT
TGGAGAACTGGCTTTAGATGGCCAACTTCGTTCAGTGACAGGAATTTTAAGTATTGCGATTGCCTGTCAGCAATCGGGAC
ATCAACTTATTCTACCTAAACAAAATGCACAAGAAGCTTCACAACTTCCTCAGTTTGAAGTTTTCGCGGCACAGCATTTA
AAAGATGTTTGTGAACATTTATCTAAGCAACAGCCTATTCCGCAATACCAAGTTCAGATGCCAATTGCAGTCGATCAGTA
TCAGTGTGATTTGGCCGATGTCAAAGGTCAACTTCGACCTCGACGTGCATTGGAAATTGCTGCAGCAGGTGGACATTCCT
TATTATTTAAAGGACCTCCAGGAACAGGAAAAACACTTTTAGCCTCGCGACTTGCCAGTATATTGCCTCCTTTAAATATG
CAAGAGAACTTAGAAGTCGCACGAATTTATTCAGTTGCCAATACTGTGCACACTTTTGGACAGCGCCCTTTTCGTGCACC
ACACCATACTGCTTCTGCAATTGCTTTAGTCGGTGGTGGCTCGCATCCTAAACCGGGCGAAATTACTTTGGCGCATTTAG
GGGTGTTATTTTTAGATGAGCTACCTGAATTTGATCGTAAAGTTTTAGAAGTTCTCAGACAGCCTTTAGAATCGAAAGAA
ATCGTGATTTCGCGTGCTTCTCGACAAATGACGTTTCCCGCAAACTTTCAATTGATTGCAGCCATGAATCCATGCCCTTG
TGGTTATGCATTTAATCAAGATGTGCGTTGTCAATGTTCAGCTGATGCTATTAAGCGTTATCAAAATCGTATTTCTGGGC
CATTGTTAGACCGTATAGACTTACATTTGGATGTCCCACCTTTGCAAGCAACCGAGTTACAAGACACCACTCCTGTAGAA
AACTCTCAGACTGTGCGTGAGCGTGTGATTCAAGCTTACCAAAGACAAATACAACGACAAAATTGTTTAAATCATGCTTT
AAGTCCGAAACAACTTGAACAATATGTGGTCTTAGACCCACAAGCACAAAAAATCATTGAAATGGCTCAGCAACGATTAA
ATTTATCTGCACGTGCTTATCATAGAGTGTTACGGGTAGCGCGCAGTATTGCAGATTTGTCTGAACACAGCGAAATTCAA
ACGCAACATCTAACTGAAGCGTTGTCTTATCGCGCACAACAAAATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M3RL70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.4

100

0.509
  comM Glaesserella parasuis strain SC1401

50.1

100

0.507
  comM Vibrio cholerae strain A1552

50.202

100

0.503
  comM Vibrio campbellii strain DS40M4

50

100

0.501
  comM Legionella pneumophila str. Paris

49.597

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.461

Multiple sequence alignment