Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AN158_RS09805 Genome accession   NZ_CP012587
Coordinates   2126369..2127856 (-) Length   495 a.a.
NCBI ID   WP_069370657.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CA-17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2121369..2132856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS17855 - 2122057..2122227 (+) 171 WP_000492276.1 hypothetical protein -
  AN158_RS09785 (AN158_09780) - 2122284..2123096 (+) 813 WP_000975212.1 TorF family putative porin -
  AN158_RS09790 (AN158_09785) - 2123139..2124017 (-) 879 WP_069370654.1 dihydrodipicolinate synthase family protein -
  AN158_RS09795 (AN158_09790) - 2124033..2124809 (-) 777 WP_069370655.1 aldolase -
  AN158_RS09800 (AN158_09795) - 2124921..2126354 (+) 1434 WP_069370656.1 PLP-dependent aminotransferase family protein -
  AN158_RS09805 (AN158_09800) comM 2126369..2127856 (-) 1488 WP_069370657.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AN158_RS09810 (AN158_09805) - 2127922..2128149 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  AN158_RS09815 (AN158_09810) glnK 2128429..2128767 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  AN158_RS09820 (AN158_09815) - 2128825..2130222 (+) 1398 WP_000738520.1 ammonium transporter -
  AN158_RS09825 (AN158_09820) nrdR 2130381..2130839 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  AN158_RS09830 (AN158_09825) ribD 2130855..2131940 (+) 1086 WP_069370658.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54438.40 Da        Isoelectric Point: 7.4186

>NTDB_id=155567 AN158_RS09805 WP_069370657.1 2126369..2127856(-) (comM) [Acinetobacter baumannii strain CA-17]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSIEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=155567 AN158_RS09805 WP_069370657.1 2126369..2127856(-) (comM) [Acinetobacter baumannii strain CA-17]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAATTGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCACTTGAATCAAAAGAA
ATTATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGGC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTAGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

49.699

100

0.501
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469

Multiple sequence alignment