Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AK823_RS13455 Genome accession   NZ_CP012529
Coordinates   3278424..3280010 (-) Length   528 a.a.
NCBI ID   WP_068329913.1    Uniprot ID   A0A7U5D2U9
Organism   Psychrobacter sp. P2G3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3273424..3285010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK823_RS13425 (AK823_13425) - 3273967..3274389 (+) 423 WP_068329898.1 acetyl-CoA sensor PanZ family protein -
  AK823_RS13435 (AK823_13435) - 3274699..3275073 (-) 375 WP_068329901.1 hypothetical protein -
  AK823_RS13440 (AK823_13440) - 3275279..3275779 (+) 501 WP_068329905.1 DUF4385 domain-containing protein -
  AK823_RS13445 (AK823_13445) - 3275924..3276601 (+) 678 WP_068329908.1 phosphoglycolate phosphatase -
  AK823_RS13450 (AK823_13450) - 3276702..3278411 (+) 1710 WP_068329910.1 formate--tetrahydrofolate ligase -
  AK823_RS13455 (AK823_13455) comM 3278424..3280010 (-) 1587 WP_068329913.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AK823_RS13460 (AK823_13460) - 3280580..3283027 (+) 2448 WP_068329917.1 penicillin acylase family protein -
  AK823_RS13465 (AK823_13465) hemN 3283471..3285009 (+) 1539 WP_068329919.1 oxygen-independent coproporphyrinogen III oxidase -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 57218.01 Da        Isoelectric Point: 6.8224

>NTDB_id=155004 AK823_RS13455 WP_068329913.1 3278424..3280010(-) (comM) [Psychrobacter sp. P2G3]
MSFAQVYTRSVVGLHAPKVIIEVHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASDQLDPEVLSGFEFIGELALNGNLRQVTGSLAVARAIKAEALALKTLKVSKASKSNNSQLNEHLQEPQ
AAQLIVPIDNGAEASRVEGVEILAADSLKAVCDHLQSLTNPNANYERLEVVQPSPAQQHTGYKVDLADVKGQHHARRALE
IAAAGGHSLLFTGPPGSGKTLMASRLPTILPDLSDEDALEVASTYSVADSDYDYGTRPFRQVHHTISAVALVGGGSRPKP
GEITLANKGVLFLDELPEFDRTVLEVLRQPLEAKQITISRANSQMTFPANFQLVAAMNPCPCGYDGDTSGRCRCRPEQIK
RYQDKLSGPLLDRIDLHITVPALPIADLQDAQAGETSEQVRTRVAAAYKNQLKRQQKVNNELSPSEIDKYIQLGEGEQQL
LQLAQQRLNLSARGYHRVLRVARTIADLADSIDITSAHVSEALSYRSK

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=155004 AK823_RS13455 WP_068329913.1 3278424..3280010(-) (comM) [Psychrobacter sp. P2G3]
ATGTCGTTTGCCCAAGTCTATACCCGTTCAGTCGTCGGTTTGCATGCCCCAAAGGTCATCATTGAAGTTCATTTGTCGCA
AGGCCTGCCAGCGTTAACGATTGTGGGTCTACCAGAAGCCGCCGTACGCGAGAGCAAAGATAGAGTGCGCTCGGCGATTC
TTAATTCAGGTTTTCAATTTCCCAATCGCCGCCTGACGATTAATTTAGCGCCAGCAGACTTACCAAAAGATGGTGCGAGG
CTAGATTTGCCGATTGCCATCGGTATTTTGGCAGCCAGCGATCAATTGGATCCAGAAGTATTGTCAGGGTTTGAGTTTAT
CGGTGAGCTTGCGTTAAATGGAAATCTGCGGCAAGTGACAGGTAGCTTGGCTGTCGCTCGAGCCATAAAAGCAGAAGCGT
TAGCCTTAAAAACGTTAAAAGTATCGAAGGCGTCAAAAAGTAATAATTCACAACTGAATGAGCATCTGCAAGAACCACAA
GCAGCGCAGTTAATCGTACCGATAGATAATGGAGCTGAGGCTAGCCGTGTTGAAGGGGTAGAGATATTGGCGGCGGATAG
TTTAAAAGCCGTTTGCGATCATCTGCAATCACTGACCAATCCAAATGCTAATTATGAGCGTTTAGAGGTCGTTCAGCCCA
GTCCGGCACAGCAGCATACGGGATATAAAGTAGATTTGGCGGATGTCAAAGGTCAGCATCATGCTAGGCGAGCATTAGAG
ATTGCCGCCGCTGGTGGGCACTCGCTGTTATTTACAGGGCCACCCGGTTCCGGTAAGACTTTAATGGCATCGCGGCTACC
GACTATCCTGCCTGATTTAAGTGACGAGGACGCGTTAGAAGTTGCTAGTACCTATTCAGTTGCAGACAGTGACTACGATT
ATGGCACACGGCCATTTAGACAAGTGCATCACACCATATCAGCGGTGGCGTTGGTCGGAGGAGGCTCACGTCCTAAACCT
GGTGAGATTACGCTTGCGAATAAGGGCGTTTTATTTCTCGATGAATTACCAGAATTTGATCGTACGGTGCTGGAAGTATT
ACGCCAGCCGTTAGAAGCGAAGCAAATCACCATTAGCCGCGCCAACTCGCAGATGACCTTTCCAGCAAACTTTCAGTTGG
TGGCGGCGATGAATCCTTGCCCTTGTGGCTATGATGGCGATACATCAGGCCGTTGTCGTTGTCGACCTGAACAGATTAAG
CGCTATCAAGATAAACTATCAGGCCCGCTACTTGATCGTATTGATTTGCATATTACCGTGCCAGCGTTACCGATTGCAGA
CCTGCAAGATGCTCAGGCTGGCGAAACATCTGAGCAGGTACGCACTCGAGTCGCTGCCGCGTATAAAAATCAATTAAAGC
GACAACAGAAAGTAAATAACGAGCTGAGCCCTAGCGAGATTGATAAATATATTCAGTTAGGCGAGGGCGAACAGCAATTA
CTACAGCTAGCTCAGCAACGCTTGAATCTATCTGCCCGTGGTTATCATCGCGTGTTGCGAGTCGCACGCACTATTGCCGA
TCTTGCCGATAGTATCGACATTACTAGCGCCCATGTGTCTGAAGCGCTGAGTTATCGTAGTAAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(225-425)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(434-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U5D2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.153

100

0.494
  comM Glaesserella parasuis strain SC1401

48.037

100

0.487
  comM Vibrio cholerae strain A1552

47.744

100

0.481
  comM Vibrio campbellii strain DS40M4

47.556

100

0.479
  comM Legionella pneumophila str. Paris

47.081

100

0.473
  comM Legionella pneumophila strain ERS1305867

47.081

100

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.884

100

0.434

Multiple sequence alignment