Detailed information NTG0154776

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: AMR84_RS01105
• Genome accession: NZ_CP012503
• Coordinates: 189398..189811 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain NGBS357
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 184398..194811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMR84_RS01085 (AMR84_01085)	-	186651..187016 (+)	366	WP_000285373.1	DUF1033 family protein	-
AMR84_RS01090 (AMR84_01090)	comYA	187189..188160 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
AMR84_RS01095 (AMR84_01095)	comYB	188054..189097 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
AMR84_RS01100 (AMR84_01100)	comGC/cglC	189094..189423 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
AMR84_RS01105 (AMR84_01105)	comYD	189398..189811 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
AMR84_RS01110 (AMR84_01110)	comGE	189783..190082 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
AMR84_RS01115 (AMR84_01115)	comGF	190036..190497 (+)	462	WP_001878820.1	competence type IV pilus minor pilin ComGF	-
AMR84_RS01120 (AMR84_01120)	comGG	190475..190846 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
AMR84_RS01125 (AMR84_01125)	comYH	190961..191935 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
AMR84_RS01130 (AMR84_01130)	-	191967..193160 (+)	1194	WP_000047534.1	acetate kinase	-
AMR84_RS01135 (AMR84_01135)	-	193312..193518 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
AMR84_RS10915	-	193577..193714 (+)	138	WP_001865900.1	hypothetical protein	-
AMR84_RS01140 (AMR84_01140)	-	193755..194210 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=154776 AMR84_RS01105 WP_000244261.1 189398..189811(+) (comYD) [Streptococcus agalactiae strain NGBS357]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=154776 AMR84_RS01105 WP_000244261.1 189398..189811(+) (comYD) [Streptococcus agalactiae strain NGBS357]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394