Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AMR71_RS00580 | Genome accession | NZ_CP012482 |
| Coordinates | 109583..110125 (+) | Length | 180 a.a. |
| NCBI ID | WP_007497456.1 | Uniprot ID | A0A5K1N7D0 |
| Organism | Bacillus altitudinis strain NJ-V2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 61002..110125 | 109583..110125 | within | 0 |
Gene organization within MGE regions
Location: 61002..110125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMR71_RS00345 (AMR71_00345) | recR | 61002..61598 (-) | 597 | WP_003218094.1 | recombination protein RecR | - |
| AMR71_RS00350 (AMR71_00350) | - | 61614..61937 (-) | 324 | WP_057079786.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AMR71_RS00355 (AMR71_00355) | dnaX | 61963..63675 (-) | 1713 | WP_057078763.1 | DNA polymerase III subunit gamma/tau | - |
| AMR71_RS00360 (AMR71_00360) | tadA | 64348..64824 (-) | 477 | WP_008342015.1 | tRNA adenosine(34) deaminase TadA | - |
| AMR71_RS00365 (AMR71_00365) | - | 64904..65458 (+) | 555 | WP_081038931.1 | cysteine hydrolase family protein | - |
| AMR71_RS00370 (AMR71_00370) | - | 65558..66805 (+) | 1248 | WP_234781037.1 | glycoside hydrolase family 18 protein | - |
| AMR71_RS00375 (AMR71_00375) | - | 66885..67508 (+) | 624 | WP_057078765.1 | deoxynucleoside kinase | - |
| AMR71_RS00380 (AMR71_00380) | - | 67505..68164 (+) | 660 | WP_008342023.1 | deoxynucleoside kinase | - |
| AMR71_RS20300 | - | 68474..68806 (-) | 333 | Protein_69 | methyl-accepting chemotaxis protein | - |
| AMR71_RS00395 (AMR71_00395) | serS | 69403..70677 (-) | 1275 | WP_057078767.1 | serine--tRNA ligase | - |
| AMR71_RS00400 (AMR71_00400) | pdxT | 70995..71585 (-) | 591 | WP_057078769.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| AMR71_RS00405 (AMR71_00405) | pdxS | 71606..72490 (-) | 885 | WP_025206589.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| AMR71_RS00410 (AMR71_00410) | - | 72717..74195 (+) | 1479 | WP_057078771.1 | PLP-dependent aminotransferase family protein | - |
| AMR71_RS00415 (AMR71_00415) | - | 74237..75562 (-) | 1326 | WP_008342036.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| AMR71_RS00420 (AMR71_00420) | guaB | 75723..77189 (-) | 1467 | WP_008342039.1 | IMP dehydrogenase | - |
| AMR71_RS00425 (AMR71_00425) | - | 77311..78279 (+) | 969 | WP_017366697.1 | YaaC family protein | - |
| AMR71_RS00455 (AMR71_00455) | gyrA | 83675..86179 (-) | 2505 | WP_046526899.1 | DNA gyrase subunit A | - |
| AMR71_RS00460 (AMR71_00460) | gyrB | 86413..88329 (-) | 1917 | WP_025206585.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| AMR71_RS00465 (AMR71_00465) | remB | 88387..88632 (-) | 246 | WP_008360920.1 | extracellular matrix regulator RemB | - |
| AMR71_RS00470 (AMR71_00470) | recF | 88650..89762 (-) | 1113 | WP_007497487.1 | DNA replication/repair protein RecF | Machinery gene |
| AMR71_RS00475 (AMR71_00475) | yaaA | 89779..89994 (-) | 216 | WP_008347598.1 | S4 domain-containing protein YaaA | - |
| AMR71_RS00480 (AMR71_00480) | dnaN | 90145..91281 (-) | 1137 | WP_008347596.1 | DNA polymerase III subunit beta | - |
| AMR71_RS00485 (AMR71_00485) | dnaA | 91478..92818 (-) | 1341 | WP_008347594.1 | chromosomal replication initiator protein DnaA | - |
| AMR71_RS00490 (AMR71_00490) | rpmH | 93439..93573 (+) | 135 | WP_008360908.1 | 50S ribosomal protein L34 | - |
| AMR71_RS00495 (AMR71_00495) | rnpA | 93652..94011 (+) | 360 | WP_035390150.1 | ribonuclease P protein component | - |
| AMR71_RS00500 (AMR71_00500) | spoIIIJ | 94170..94952 (+) | 783 | WP_089374159.1 | YidC family membrane integrase SpoIIIJ | - |
| AMR71_RS00505 (AMR71_00505) | jag | 94949..95572 (+) | 624 | WP_057078773.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| AMR71_RS00510 (AMR71_00510) | mnmE | 95975..97354 (+) | 1380 | WP_017359868.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| AMR71_RS00515 (AMR71_00515) | mnmG | 97372..99258 (+) | 1887 | WP_039169033.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| AMR71_RS00520 (AMR71_00520) | rsmG | 99272..99991 (+) | 720 | WP_007497477.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| AMR71_RS00525 (AMR71_00525) | noc | 100097..100972 (+) | 876 | WP_057078775.1 | nucleoid occlusion protein | - |
| AMR71_RS00530 (AMR71_00530) | - | 101102..101938 (+) | 837 | WP_057078777.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| AMR71_RS00535 (AMR71_00535) | soj | 102174..102935 (+) | 762 | WP_008360890.1 | sporulation initiation inhibitor protein Soj | - |
| AMR71_RS00540 (AMR71_00540) | - | 102928..103782 (+) | 855 | WP_057078779.1 | ParB/RepB/Spo0J family partition protein | - |
| AMR71_RS00545 (AMR71_00545) | yyaC | 103808..104434 (-) | 627 | WP_008347570.1 | spore protease YyaC | - |
| AMR71_RS00550 (AMR71_00550) | - | 104507..105562 (+) | 1056 | WP_079919768.1 | hypothetical protein | - |
| AMR71_RS00555 (AMR71_00555) | - | 105588..105998 (-) | 411 | WP_057078781.1 | hypothetical protein | - |
| AMR71_RS00560 (AMR71_00560) | - | 106014..107333 (-) | 1320 | WP_035704112.1 | phage hydrolase | - |
| AMR71_RS00565 (AMR71_00565) | - | 107628..107834 (+) | 207 | WP_008347561.1 | DUF951 domain-containing protein | - |
| AMR71_RS00570 (AMR71_00570) | ychF | 108050..109150 (+) | 1101 | WP_007497458.1 | redox-regulated ATPase YchF | - |
| AMR71_RS00575 (AMR71_00575) | rpsF | 109259..109546 (+) | 288 | WP_008347557.1 | 30S ribosomal protein S6 | - |
| AMR71_RS00580 (AMR71_00580) | ssbA | 109583..110125 (+) | 543 | WP_007497456.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19605.15 Da Isoelectric Point: 4.6109
>NTDB_id=154624 AMR71_RS00580 WP_007497456.1 109583..110125(+) (ssbA) [Bacillus altitudinis strain NJ-V2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=154624 AMR71_RS00580 WP_007497456.1 109583..110125(+) (ssbA) [Bacillus altitudinis strain NJ-V2]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
85.556 |
100 |
0.856 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.376 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
58.889 |
0.378 |
| ssb | Glaesserella parasuis strain SC1401 |
35.714 |
100 |
0.361 |