Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AMR71_RS00470 Genome accession   NZ_CP012482
Coordinates   88650..89762 (-) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain NJ-V2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 61002..110125 88650..89762 within 0


Gene organization within MGE regions


Location: 61002..110125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS00345 (AMR71_00345) recR 61002..61598 (-) 597 WP_003218094.1 recombination protein RecR -
  AMR71_RS00350 (AMR71_00350) - 61614..61937 (-) 324 WP_057079786.1 YbaB/EbfC family nucleoid-associated protein -
  AMR71_RS00355 (AMR71_00355) dnaX 61963..63675 (-) 1713 WP_057078763.1 DNA polymerase III subunit gamma/tau -
  AMR71_RS00360 (AMR71_00360) tadA 64348..64824 (-) 477 WP_008342015.1 tRNA adenosine(34) deaminase TadA -
  AMR71_RS00365 (AMR71_00365) - 64904..65458 (+) 555 WP_081038931.1 cysteine hydrolase family protein -
  AMR71_RS00370 (AMR71_00370) - 65558..66805 (+) 1248 WP_234781037.1 glycoside hydrolase family 18 protein -
  AMR71_RS00375 (AMR71_00375) - 66885..67508 (+) 624 WP_057078765.1 deoxynucleoside kinase -
  AMR71_RS00380 (AMR71_00380) - 67505..68164 (+) 660 WP_008342023.1 deoxynucleoside kinase -
  AMR71_RS20300 - 68474..68806 (-) 333 Protein_69 methyl-accepting chemotaxis protein -
  AMR71_RS00395 (AMR71_00395) serS 69403..70677 (-) 1275 WP_057078767.1 serine--tRNA ligase -
  AMR71_RS00400 (AMR71_00400) pdxT 70995..71585 (-) 591 WP_057078769.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  AMR71_RS00405 (AMR71_00405) pdxS 71606..72490 (-) 885 WP_025206589.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  AMR71_RS00410 (AMR71_00410) - 72717..74195 (+) 1479 WP_057078771.1 PLP-dependent aminotransferase family protein -
  AMR71_RS00415 (AMR71_00415) - 74237..75562 (-) 1326 WP_008342036.1 D-alanyl-D-alanine carboxypeptidase family protein -
  AMR71_RS00420 (AMR71_00420) guaB 75723..77189 (-) 1467 WP_008342039.1 IMP dehydrogenase -
  AMR71_RS00425 (AMR71_00425) - 77311..78279 (+) 969 WP_017366697.1 YaaC family protein -
  AMR71_RS00455 (AMR71_00455) gyrA 83675..86179 (-) 2505 WP_046526899.1 DNA gyrase subunit A -
  AMR71_RS00460 (AMR71_00460) gyrB 86413..88329 (-) 1917 WP_025206585.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AMR71_RS00465 (AMR71_00465) remB 88387..88632 (-) 246 WP_008360920.1 extracellular matrix regulator RemB -
  AMR71_RS00470 (AMR71_00470) recF 88650..89762 (-) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  AMR71_RS00475 (AMR71_00475) yaaA 89779..89994 (-) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  AMR71_RS00480 (AMR71_00480) dnaN 90145..91281 (-) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  AMR71_RS00485 (AMR71_00485) dnaA 91478..92818 (-) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  AMR71_RS00490 (AMR71_00490) rpmH 93439..93573 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  AMR71_RS00495 (AMR71_00495) rnpA 93652..94011 (+) 360 WP_035390150.1 ribonuclease P protein component -
  AMR71_RS00500 (AMR71_00500) spoIIIJ 94170..94952 (+) 783 WP_089374159.1 YidC family membrane integrase SpoIIIJ -
  AMR71_RS00505 (AMR71_00505) jag 94949..95572 (+) 624 WP_057078773.1 RNA-binding cell elongation regulator Jag/EloR -
  AMR71_RS00510 (AMR71_00510) mnmE 95975..97354 (+) 1380 WP_017359868.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  AMR71_RS00515 (AMR71_00515) mnmG 97372..99258 (+) 1887 WP_039169033.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  AMR71_RS00520 (AMR71_00520) rsmG 99272..99991 (+) 720 WP_007497477.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AMR71_RS00525 (AMR71_00525) noc 100097..100972 (+) 876 WP_057078775.1 nucleoid occlusion protein -
  AMR71_RS00530 (AMR71_00530) - 101102..101938 (+) 837 WP_057078777.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  AMR71_RS00535 (AMR71_00535) soj 102174..102935 (+) 762 WP_008360890.1 sporulation initiation inhibitor protein Soj -
  AMR71_RS00540 (AMR71_00540) - 102928..103782 (+) 855 WP_057078779.1 ParB/RepB/Spo0J family partition protein -
  AMR71_RS00545 (AMR71_00545) yyaC 103808..104434 (-) 627 WP_008347570.1 spore protease YyaC -
  AMR71_RS00550 (AMR71_00550) - 104507..105562 (+) 1056 WP_079919768.1 hypothetical protein -
  AMR71_RS00555 (AMR71_00555) - 105588..105998 (-) 411 WP_057078781.1 hypothetical protein -
  AMR71_RS00560 (AMR71_00560) - 106014..107333 (-) 1320 WP_035704112.1 phage hydrolase -
  AMR71_RS00565 (AMR71_00565) - 107628..107834 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  AMR71_RS00570 (AMR71_00570) ychF 108050..109150 (+) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  AMR71_RS00575 (AMR71_00575) rpsF 109259..109546 (+) 288 WP_008347557.1 30S ribosomal protein S6 -
  AMR71_RS00580 (AMR71_00580) ssbA 109583..110125 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=154623 AMR71_RS00470 WP_007497487.1 88650..89762(-) (recF) [Bacillus altitudinis strain NJ-V2]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=154623 AMR71_RS00470 WP_007497487.1 88650..89762(-) (recF) [Bacillus altitudinis strain NJ-V2]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment