Detailed information NTG0154378

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: AMD29_RS01305
• Genome accession: NZ_CP012419
• Coordinates: 216063..216476 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SG-M1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 211063..221476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMD29_RS01285 (AMD29_01285)	-	213316..213681 (+)	366	WP_000285373.1	DUF1033 family protein	-
AMD29_RS01290 (AMD29_01290)	comYA	213854..214825 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
AMD29_RS01295 (AMD29_01295)	comYB	214719..215762 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
AMD29_RS01300 (AMD29_01300)	comGC/cglC	215759..216088 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
AMD29_RS01305 (AMD29_01305)	comYD	216063..216476 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
AMD29_RS01310 (AMD29_01310)	comGE	216448..216747 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
AMD29_RS01315 (AMD29_01315)	comGF	216701..217162 (+)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
AMD29_RS01320 (AMD29_01320)	comGG	217140..217511 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
AMD29_RS01325 (AMD29_01325)	comYH	217626..218600 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
AMD29_RS01330 (AMD29_01330)	-	218632..219825 (+)	1194	WP_000047534.1	acetate kinase	-
AMD29_RS01335 (AMD29_01335)	-	219977..220183 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
AMD29_RS11805	-	220251..220379 (+)	129	WP_014959723.1	hypothetical protein	-
AMD29_RS01340 (AMD29_01340)	-	220420..220875 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=154378 AMD29_RS01305 WP_000244261.1 216063..216476(+) (comYD) [Streptococcus agalactiae strain SG-M1]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=154378 AMD29_RS01305 WP_000244261.1 216063..216476(+) (comYD) [Streptococcus agalactiae strain SG-M1]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394