Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   A6K30_RS01585 Genome accession   NZ_CP015528
Coordinates   315748..316344 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain YH501     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310748..321344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6K30_RS01570 (A6K30_01570) ctsR 313455..313766 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  A6K30_RS01575 (A6K30_01575) ctsD 313744..315162 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A6K30_RS01580 (A6K30_01580) ctsP 315155..315751 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  A6K30_RS01585 (A6K30_01585) ctsX 315748..316344 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  A6K30_RS01590 (A6K30_01590) ctsE 316337..317899 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  A6K30_RS01595 (A6K30_01595) ctsF 317886..319061 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  A6K30_RS01600 (A6K30_01600) - 319058..319822 (-) 765 WP_002781157.1 TSUP family transporter -
  A6K30_RS01605 (A6K30_01605) - 319825..320589 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=154073 A6K30_RS01585 WP_002779313.1 315748..316344(+) (ctsX) [Campylobacter coli strain YH501]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=154073 A6K30_RS01585 WP_002779313.1 315748..316344(+) (ctsX) [Campylobacter coli strain YH501]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment