Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AKN89_RS04210 | Genome accession | NZ_CP012364 |
| Coordinates | 889365..889670 (+) | Length | 101 a.a. |
| NCBI ID | WP_053101175.1 | Uniprot ID | A0A0K1XEZ4 |
| Organism | Thiopseudomonas alkaliphila strain E1148 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 884365..894670
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKN89_RS04190 (AKN89_04190) | recR | 885353..885952 (-) | 600 | WP_053101183.1 | recombination mediator RecR | - |
| AKN89_RS04195 (AKN89_04195) | - | 886010..886336 (-) | 327 | WP_053101181.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AKN89_RS11660 | - | 886360..886863 (-) | 504 | WP_231692687.1 | DNA polymerase III subunit gamma/tau C-terminal domain-containing protein | - |
| AKN89_RS04200 (AKN89_04200) | dnaX | 886985..888271 (-) | 1287 | WP_231692688.1 | DNA polymerase III subunit gamma/tau | - |
| AKN89_RS04205 (AKN89_04205) | - | 888595..889275 (-) | 681 | WP_053105123.1 | thiopurine S-methyltransferase | - |
| AKN89_RS04210 (AKN89_04210) | comEA | 889365..889670 (+) | 306 | WP_053101175.1 | ComEA family DNA-binding protein | Machinery gene |
| AKN89_RS04215 (AKN89_04215) | - | 889682..889975 (-) | 294 | WP_053101173.1 | YcgL domain-containing protein | - |
| AKN89_RS04220 (AKN89_04220) | rnd | 889975..891099 (-) | 1125 | WP_053108051.1 | ribonuclease D | - |
| AKN89_RS04225 (AKN89_04225) | - | 891417..892058 (+) | 642 | WP_053101169.1 | response regulator | - |
| AKN89_RS04230 (AKN89_04230) | uvrC | 892060..893886 (+) | 1827 | WP_053108812.1 | excinuclease ABC subunit UvrC | - |
| AKN89_RS04235 (AKN89_04235) | pgsA | 893909..894472 (+) | 564 | WP_053108052.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 10831.50 Da Isoelectric Point: 5.6651
>NTDB_id=153826 AKN89_RS04210 WP_053101175.1 889365..889670(+) (comEA) [Thiopseudomonas alkaliphila strain E1148]
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
Nucleotide
Download Length: 306 bp
>NTDB_id=153826 AKN89_RS04210 WP_053101175.1 889365..889670(+) (comEA) [Thiopseudomonas alkaliphila strain E1148]
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACACTGGAAAAAAATCGCGATAAATTATCGCTCTAA
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACACTGGAAAAAAATCGCGATAAATTATCGCTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.495 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50.495 |
100 |
0.505 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
44.037 |
100 |
0.475 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.593 |
100 |
0.465 |
| comEA | Legionella pneumophila str. Paris |
43.878 |
97.03 |
0.426 |
| comEA | Legionella pneumophila strain ERS1305867 |
43.878 |
97.03 |
0.426 |