Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AKN93_RS05085 | Genome accession | NZ_CP012360 |
| Coordinates | 1054187..1054492 (-) | Length | 101 a.a. |
| NCBI ID | WP_053101175.1 | Uniprot ID | A0A0K1XEZ4 |
| Organism | Thiopseudomonas alkaliphila strain C6918 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1049187..1059492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKN93_RS05060 (AKN93_05070) | pgsA | 1049374..1049937 (-) | 564 | WP_053105121.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| AKN93_RS05065 (AKN93_05075) | uvrC | 1049960..1051786 (-) | 1827 | WP_053105792.1 | excinuclease ABC subunit UvrC | - |
| AKN93_RS05070 (AKN93_05080) | - | 1051788..1052429 (-) | 642 | WP_053101169.1 | response regulator | - |
| AKN93_RS05075 (AKN93_05085) | rnd | 1052758..1053882 (+) | 1125 | WP_053105122.1 | ribonuclease D | - |
| AKN93_RS05080 (AKN93_05090) | - | 1053882..1054175 (+) | 294 | WP_053101173.1 | YcgL domain-containing protein | - |
| AKN93_RS05085 (AKN93_05095) | comEA | 1054187..1054492 (-) | 306 | WP_053101175.1 | ComEA family DNA-binding protein | Machinery gene |
| AKN93_RS05090 (AKN93_05100) | - | 1054582..1055262 (+) | 681 | WP_053105123.1 | thiopurine S-methyltransferase | - |
| AKN93_RS05095 (AKN93_05105) | dnaX | 1055586..1057490 (+) | 1905 | WP_053105124.1 | DNA polymerase III subunit gamma/tau | - |
| AKN93_RS05100 (AKN93_05110) | - | 1057514..1057840 (+) | 327 | WP_053101181.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AKN93_RS05105 (AKN93_05115) | recR | 1057898..1058497 (+) | 600 | WP_053101183.1 | recombination mediator RecR | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 10831.50 Da Isoelectric Point: 5.6651
>NTDB_id=153775 AKN93_RS05085 WP_053101175.1 1054187..1054492(-) (comEA) [Thiopseudomonas alkaliphila strain C6918]
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
Nucleotide
Download Length: 306 bp
>NTDB_id=153775 AKN93_RS05085 WP_053101175.1 1054187..1054492(-) (comEA) [Thiopseudomonas alkaliphila strain C6918]
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACACTGGAAAAAAATCGCGATAAATTATCGCTCTAA
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACACTGGAAAAAAATCGCGATAAATTATCGCTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.495 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50.495 |
100 |
0.505 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
44.037 |
100 |
0.475 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.593 |
100 |
0.465 |
| comEA | Legionella pneumophila str. Paris |
43.878 |
97.03 |
0.426 |
| comEA | Legionella pneumophila strain ERS1305867 |
43.878 |
97.03 |
0.426 |