Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AKN94_RS05790 | Genome accession | NZ_CP012359 |
| Coordinates | 1206955..1207260 (+) | Length | 101 a.a. |
| NCBI ID | WP_053101175.1 | Uniprot ID | A0A0K1XEZ4 |
| Organism | Thiopseudomonas alkaliphila strain C6819 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1201955..1212260
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKN94_RS05770 (AKN94_05765) | recR | 1202902..1203501 (-) | 600 | WP_053101183.1 | recombination mediator RecR | - |
| AKN94_RS05775 (AKN94_05770) | - | 1203559..1203885 (-) | 327 | WP_053101181.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AKN94_RS05780 (AKN94_05775) | dnaX | 1203909..1205861 (-) | 1953 | WP_053111166.1 | DNA polymerase III subunit gamma/tau | - |
| AKN94_RS05785 (AKN94_05780) | - | 1206185..1206865 (-) | 681 | WP_053105123.1 | thiopurine S-methyltransferase | - |
| AKN94_RS05790 (AKN94_05785) | comEA | 1206955..1207260 (+) | 306 | WP_053101175.1 | ComEA family DNA-binding protein | Machinery gene |
| AKN94_RS05795 (AKN94_05790) | - | 1207272..1207565 (-) | 294 | WP_053101173.1 | YcgL domain-containing protein | - |
| AKN94_RS05800 (AKN94_05795) | rnd | 1207565..1208689 (-) | 1125 | WP_053105122.1 | ribonuclease D | - |
| AKN94_RS05805 (AKN94_05800) | - | 1209018..1209659 (+) | 642 | WP_053111167.1 | response regulator | - |
| AKN94_RS05810 (AKN94_05805) | uvrC | 1209661..1211487 (+) | 1827 | WP_053106629.1 | excinuclease ABC subunit UvrC | - |
| AKN94_RS05815 (AKN94_05810) | pgsA | 1211510..1212073 (+) | 564 | WP_053105121.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 10831.50 Da Isoelectric Point: 5.6651
>NTDB_id=153751 AKN94_RS05790 WP_053101175.1 1206955..1207260(+) (comEA) [Thiopseudomonas alkaliphila strain C6819]
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
Nucleotide
Download Length: 306 bp
>NTDB_id=153751 AKN94_RS05790 WP_053101175.1 1206955..1207260(+) (comEA) [Thiopseudomonas alkaliphila strain C6819]
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACACTGGAAAAAAATCGCGATAAATTATCGCTCTAA
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACACTGGAAAAAAATCGCGATAAATTATCGCTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.495 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50.495 |
100 |
0.505 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
44.037 |
100 |
0.475 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.593 |
100 |
0.465 |
| comEA | Legionella pneumophila str. Paris |
43.878 |
97.03 |
0.426 |
| comEA | Legionella pneumophila strain ERS1305867 |
43.878 |
97.03 |
0.426 |