Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ADU69_RS00550 Genome accession   NZ_CP012269
Coordinates   127084..128886 (-) Length   600 a.a.
NCBI ID   WP_046871795.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1532     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 122084..133886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU69_RS00525 (ADU69_0187) mgtE 122388..123740 (-) 1353 WP_046871800.1 magnesium transporter -
  ADU69_RS00530 (ADU69_0188) - 123759..124664 (-) 906 WP_046871799.1 RluA family pseudouridine synthase -
  ADU69_RS00535 (ADU69_0189) - 124654..125460 (-) 807 WP_062903771.1 NAD kinase -
  ADU69_RS00540 (ADU69_0190) - 125467..126117 (-) 651 WP_062903772.1 GTP pyrophosphokinase -
  ADU69_RS00545 (ADU69_0191) - 126392..127006 (+) 615 WP_046871796.1 DsbA family protein -
  ADU69_RS00550 (ADU69_0192) pepF 127084..128886 (-) 1803 WP_046871795.1 oligoendopeptidase F Regulator
  ADU69_RS00555 (ADU69_0193) - 128931..130097 (-) 1167 WP_145912920.1 competence protein CoiA -
  ADU69_RS00560 (ADU69_0194) - 130148..130864 (-) 717 WP_056986055.1 adaptor protein MecA -
  ADU69_RS00565 (ADU69_0195) spxA 130990..131388 (-) 399 WP_056986056.1 transcriptional regulator SpxA -
  ADU69_RS00570 (ADU69_0196) - 131720..132460 (-) 741 WP_046871792.1 MBL fold metallo-hydrolase -
  ADU69_RS00575 (ADU69_0197) - 132688..133197 (+) 510 WP_056986581.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68559.88 Da        Isoelectric Point: 5.0497

>NTDB_id=153141 ADU69_RS00550 WP_046871795.1 127084..128886(-) (pepF) [Pediococcus damnosus strain TMW 2.1532]
MAEIKQLPKRSEVPVALTWDLSTIFKDESALKKAIAQLSPQVDALLESSGNLANNGATLLTAIQSELKIENQLERIYVYA
ELKNDQDTSNNQNQALKDQVNDLVAKVSAKLAWLEPEILAIPKATLANFQNNNADFKPYKHYFDVLNLKRKHVLSTKEEA
ILAGASSIFETSENVFGILDNSDLKFPFVKNTAGETVQLSQGMYSTLLQSTHQSVRKQAFEQLYAVYEQFKNTFATTLAG
EVKVHNFNAQIRGYESARQAAMSESAIPETVYTNLVTEVNQHLDLLHRYVGLRKKILNLKELHMYDLYTPITGKSPLNYT
YLEAQEEAKAALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHS
YYTTHNQPYQYGDYPIFVAEIASTTNENILTQYLLDKYDDPQIKLFVLNHYLDDFKGTVYRQTQFAEFEQFIHEADARGE
ALTAEMMSDYYGKLNHRYYGDDVVNDSQIKSEWTRIPHFYYNFYVYQYATGFAAASALAKGITTHQPHAKDNYLTYLKSG
SSDFPLDVMKRAGVDMSQKQYLEDAFDVFEQRLNEFENLL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=153141 ADU69_RS00550 WP_046871795.1 127084..128886(-) (pepF) [Pediococcus damnosus strain TMW 2.1532]
ATGGCAGAGATCAAGCAATTACCTAAACGTAGCGAAGTTCCAGTTGCATTGACATGGGATCTTTCAACAATTTTCAAAGA
TGAATCAGCGCTAAAAAAAGCGATCGCACAATTGTCTCCACAAGTCGATGCTTTACTGGAATCGTCTGGAAATTTAGCAA
ACAACGGAGCGACTTTGTTAACAGCAATACAAAGTGAGCTTAAAATTGAAAATCAATTGGAACGTATTTATGTTTATGCG
GAGTTAAAGAATGATCAAGACACGTCAAATAATCAGAATCAGGCGCTTAAAGATCAAGTAAATGATTTAGTGGCCAAGGT
ATCTGCAAAGCTAGCGTGGTTAGAACCTGAAATTTTAGCGATTCCTAAGGCTACATTGGCAAATTTTCAAAATAATAATG
CTGATTTTAAGCCCTATAAGCATTATTTCGACGTTCTTAATTTAAAAAGAAAGCACGTTCTTTCTACCAAAGAGGAAGCA
ATTTTGGCTGGTGCGAGTTCCATTTTCGAGACATCTGAGAATGTATTTGGAATTTTGGACAATTCAGATCTTAAATTTCC
ATTTGTGAAAAATACAGCTGGAGAAACCGTTCAGCTGTCTCAGGGAATGTATTCCACACTTTTACAATCTACTCATCAAT
CTGTGCGTAAACAAGCTTTCGAACAGCTCTATGCGGTGTATGAACAATTTAAAAATACTTTCGCAACGACATTAGCTGGA
GAGGTTAAGGTTCATAATTTTAATGCGCAAATCAGAGGTTATGAGAGTGCACGTCAGGCGGCAATGAGCGAAAGCGCGAT
TCCTGAAACAGTTTATACGAATTTGGTAACTGAGGTAAATCAGCATTTAGATTTGCTGCATCGCTATGTTGGATTGAGAA
AGAAAATTCTTAATTTAAAAGAATTACATATGTATGATTTATATACACCAATTACTGGAAAATCGCCCCTCAATTACACA
TATTTGGAAGCTCAAGAAGAAGCAAAGGCTGCCCTTCAAATCATGGGTGATGATTATGTAAGTCATGTTGATGAAGCTTT
CAAGAATCGCTGGATCGACGTTGTTGAAAACCAAGGGAAACGAAGTGGGGCGTATTCTTCTGGTGTCTATGGAACAAATC
CATTTATGTTGTTGAATTGGCAAGATGATTTGGACAATTTATTCACATTGGTTCATGAAATGGGGCATAGTATGCACAGC
TATTACACGACGCATAATCAACCCTATCAATATGGTGATTATCCAATTTTTGTTGCTGAAATTGCATCGACAACTAATGA
AAATATTTTAACTCAATATTTATTGGATAAATATGATGATCCTCAAATTAAACTGTTTGTTTTGAATCATTATTTGGATG
ATTTCAAGGGGACCGTTTATCGACAAACACAATTCGCTGAATTTGAACAATTTATTCATGAAGCAGACGCCCGTGGGGAA
GCCTTGACTGCAGAAATGATGTCCGACTACTACGGAAAATTAAACCATCGATATTACGGTGACGATGTTGTTAATGATTC
CCAAATAAAGTCAGAATGGACTAGGATTCCTCATTTTTATTACAATTTTTATGTGTATCAATACGCAACAGGTTTTGCAG
CGGCTTCGGCCTTGGCTAAGGGCATTACAACTCATCAACCACATGCAAAAGATAACTATTTGACGTATTTGAAATCAGGA
AGCTCAGATTTTCCCTTAGATGTGATGAAGAGGGCAGGAGTCGATATGTCACAGAAGCAATATTTAGAGGATGCTTTTGA
TGTATTTGAACAGCGTTTAAACGAATTTGAAAATTTATTGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.085

98.5

0.493

Multiple sequence alignment