Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AFK67_RS01175 Genome accession   NZ_CP012266
Coordinates   250953..252473 (-) Length   506 a.a.
NCBI ID   WP_007716990.1    Uniprot ID   -
Organism   Cronobacter dublinensis subsp. dublinensis LMG 23823     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 245953..257473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK67_RS01165 (AFK67_01160) hdfR 249596..250417 (-) 822 WP_007716986.1 HTH-type transcriptional regulator HdfR -
  AFK67_RS01170 (AFK67_01165) - 250537..250875 (+) 339 WP_007716988.1 DUF413 domain-containing protein -
  AFK67_RS01175 (AFK67_01170) comM 250953..252473 (-) 1521 WP_007716990.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AFK67_RS21410 ilvL 252824..252922 (+) 99 WP_071601137.1 ilv operon leader peptide -
  AFK67_RS01180 (AFK67_01175) ilvG 253061..254707 (+) 1647 WP_007716992.1 acetolactate synthase 2 catalytic subunit -
  AFK67_RS01185 (AFK67_01180) ilvM 254704..254961 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  AFK67_RS01190 (AFK67_01185) - 254982..255911 (+) 930 WP_007716995.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55179.49 Da        Isoelectric Point: 7.8438

>NTDB_id=153100 AFK67_RS01175 WP_007716990.1 250953..252473(-) (comM) [Cronobacter dublinensis subsp. dublinensis LMG 23823]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTLVGLPETTVKEARDRVRSALINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLHASHLGEYEFVGELALTGALRGVPGAISAAMEALDCKRKIIVAHDNAPEVGLINKEGCLVAHHL
QEVCAFLEGKTTLETAEPCESHFKEPVGDLSEVIGQSQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAVPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLRQSAQTG
ESSSQVRERVIQSRNRQLARQGKLNAMLDNREIRQFCMLSAEDAQWLEAALLKLGLSVRAWQRLLKVARTIADSEQKERI
TREHLQEALSYRAIDRMLAHLQNLMP

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=153100 AFK67_RS01175 WP_007716990.1 250953..252473(-) (comM) [Cronobacter dublinensis subsp. dublinensis LMG 23823]
ATGTCGCTGTCTGTTATTCATACCCGCGCCGCGCTGGGCGTAAAAGCGCCGCTCGTCACTGTCGAAGTACATATCAGTGC
CGGGCTACCAGGCCTGACATTGGTCGGACTACCAGAAACGACGGTAAAGGAAGCCAGAGATCGTGTGCGCAGCGCGCTTA
TCAATAGTGGTTATGATTTCCCGGCCAAAAAAATCACTATAAATCTCGCGCCTGCCGATTTGCCCAAGGAAGGGGGACGA
TATGATTTGCCGATAGCGATAGCGCTCCTCGCCGCGTCTGAGCAGTTGCATGCCTCACATCTTGGAGAGTATGAATTTGT
GGGGGAACTAGCGCTGACAGGCGCGCTGAGAGGCGTCCCCGGTGCGATTTCAGCCGCCATGGAAGCGCTTGACTGTAAAA
GGAAGATAATTGTCGCGCACGACAACGCGCCGGAAGTGGGATTGATTAATAAAGAAGGCTGCCTTGTCGCCCATCATCTG
CAAGAAGTGTGTGCCTTTCTGGAAGGGAAAACGACGCTGGAAACAGCCGAGCCATGCGAGTCTCATTTTAAGGAGCCTGT
GGGCGATCTCAGTGAAGTTATCGGACAGTCACAGGGGAAACGCGCACTGGAATTAACGGCAGCTGGCGGCCATAACCTAT
TGTTTATCGGTCCCCCCGGTACAGGAAAAACGATGCTGGCCAGCAGACTCAACGGATTGTTGCCGCCTCTGAGCGATCAG
GAAGCACTGGAGAGCGCGGCGATACTCAGCCTCGTCAACCCCGTCTCTTTACATCATCAATGGCGTCAGCGGCCTTTCAG
GGCCCCTCACCATAGCGCGTCGCTGAATGCAATGGTGGGCGGAGGTGCCGTCCCTGCGCCCGGAGAAATTTCTCTTGCCC
ATAACGGCGTACTTTTTCTTGATGAATTACCAGAGTTTGAACGCCGTGTACTGGATGCATTACGTGAGCCTATTGAATCC
GGACAGATCCATCTTTCACGAACCCGAGCCAAGCTTACTTATCCAGCGCGCTTTCAGCTTATTGCTGCGATGAACCCCAG
CCCTACGGGGCACTATAAAGGGAACCATAACCGCTGCTCACCGGAACAGACGCTACGTTACCTGGGACGTCTTTCCGGGC
CTTTCCTAGACCGGTTTGATCTCTCGCTGGAAATTCCGTTGCCGCCGCCAGGTATGCTCCGTCAGTCAGCGCAGACGGGC
GAAAGCAGTTCGCAGGTCCGTGAGCGCGTCATTCAAAGCCGTAACAGACAGCTTGCACGGCAAGGGAAGCTCAACGCGAT
GCTGGATAATCGGGAGATACGCCAGTTTTGTATGCTGAGTGCTGAAGATGCACAGTGGCTTGAAGCGGCACTACTCAAAC
TCGGGTTGTCGGTACGCGCCTGGCAGCGTTTACTGAAGGTTGCGCGAACTATCGCGGATAGCGAACAGAAAGAGAGGATT
ACTCGGGAACATTTGCAGGAAGCGCTAAGCTATCGCGCGATAGACAGGATGCTCGCGCATTTGCAAAACCTGATGCCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.511

100

0.609
  comM Glaesserella parasuis strain SC1401

60.158

100

0.603
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Vibrio cholerae strain A1552

59.642

99.407

0.593
  comM Legionella pneumophila str. Paris

47.887

98.221

0.47
  comM Legionella pneumophila strain ERS1305867

47.887

98.221

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

100

0.439

Multiple sequence alignment