Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AFK62_RS01200 Genome accession   NZ_CP012264
Coordinates   256896..258416 (-) Length   506 a.a.
NCBI ID   WP_007677358.1    Uniprot ID   -
Organism   Cronobacter condimenti 1330 strain LMG 26250     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 251896..263416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK62_RS01190 (AFK62_01190) hdfR 255537..256358 (-) 822 WP_007677352.1 HTH-type transcriptional regulator HdfR -
  AFK62_RS01195 (AFK62_01195) - 256478..256816 (+) 339 WP_007677355.1 DUF413 domain-containing protein -
  AFK62_RS01200 (AFK62_01200) comM 256896..258416 (-) 1521 WP_007677358.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AFK62_RS20690 ilvL 258768..258866 (+) 99 WP_071601137.1 ilv operon leader peptide -
  AFK62_RS01205 (AFK62_01205) ilvG 259005..260651 (+) 1647 WP_032984691.1 acetolactate synthase 2 catalytic subunit -
  AFK62_RS01210 (AFK62_01210) ilvM 260648..260911 (+) 264 WP_007677367.1 acetolactate synthase 2 small subunit -
  AFK62_RS01215 (AFK62_01215) - 260932..261861 (+) 930 WP_007677369.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54957.40 Da        Isoelectric Point: 8.6169

>NTDB_id=153080 AFK62_RS01200 WP_007677358.1 256896..258416(-) (comM) [Cronobacter condimenti 1330 strain LMG 26250]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPARKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSALRLEEYEFVGELALTGALRGVPGAISAAMEALRCKRKIIVAHDNTSEVGLINKEGCFVARHL
QEVCAFLEGKLMLEQALPSEEQFKGPAGDLSEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSNQ
EALESAAILSLVNPVSLHNQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GHIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGSHNRCSPEQTLRYLGRLSGPFLDRFDISLEIPLPPPGMLSQAGKSG
ENSAQVRERVIQSRARQIARQGKLNAMLDNKEIQQFCTLSAEDAQWLESALIKLGLSVRAWQRLLKVARTIADSEQKEEI
SRAHLQEALGYRAIDRMLAHLQSLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=153080 AFK62_RS01200 WP_007677358.1 256896..258416(-) (comM) [Cronobacter condimenti 1330 strain LMG 26250]
ATGTCGTTGTCTGTTATCCATACCCGTGCGGCGCTAGGGGTGAAAGCGCCACTTGTTACGGTCGAAGTGCATATCAGTGC
TGGCCTGCCTGGACTGACTATAGTTGGTCTGCCTGAAACGACAGTAAAAGAAGCAAGAGACCGCGTTCGCAGTGCGTTAA
TCAATAGCGGGTATGAATTTCCGGCCAGGAAAATCACAATTAACCTGGCACCGGCTGATCTGCCTAAGGAAGGGGGACGA
TATGATTTACCAATCGCTATCGCGCTTCTCGCTGCCTCTGAGCAGCTTAGCGCTTTACGGCTTGAGGAATATGAATTCGT
GGGTGAACTTGCCCTAACGGGCGCGCTGAGGGGCGTGCCGGGCGCAATATCAGCAGCGATGGAAGCGCTGAGATGTAAAA
GGAAGATTATCGTCGCACACGATAATACTTCAGAAGTAGGGTTGATCAATAAAGAGGGCTGTTTTGTTGCTCGTCACTTA
CAAGAGGTGTGCGCTTTTCTGGAAGGCAAACTGATGCTGGAACAAGCGCTGCCTTCAGAAGAGCAGTTTAAAGGACCCGC
AGGTGATCTCAGTGAAGTTATCGGTCAGCCACAGGGTAAACGTGCGCTTGAGCTAACCGCAGCAGGGGGTCATAACTTGC
TGTTTATAGGTCCTCCGGGCACTGGCAAGACTATGCTGGCGAGCAGACTTAACGGATTACTGCCGCCTCTGAGCAATCAG
GAGGCACTGGAGAGCGCGGCGATACTTAGCCTGGTCAATCCCGTCTCTTTACATAACCAATGGCGCCAGCGACCTTTCAG
AGCCCCTCACCATAGCGCCTCCCTGAATGCAATGGTCGGTGGTGGGGCTATACCCGCGCCTGGGGAGATATCACTCGCCC
ATAATGGCGTACTTTTTTTAGATGAATTGCCTGAATTCGAACGCCGTGTGCTGGATGCCCTTCGTGAACCTATAGAATCA
GGCCACATTCACCTTTCTCGTACCCGCGCCAAGCTAACTTACCCGGCACGCTTTCAACTTATTGCCGCCATGAACCCCAG
CCCGACAGGACACTATAAGGGAAGTCATAACCGCTGTTCTCCGGAACAAACGCTACGTTACCTCGGGCGCCTTTCAGGGC
CTTTCCTCGACAGGTTTGATATCTCCCTGGAGATCCCCCTGCCCCCTCCCGGAATGCTTAGCCAGGCAGGAAAATCCGGC
GAAAATAGCGCGCAGGTACGTGAGCGCGTTATTCAAAGCAGAGCACGGCAGATTGCAAGACAAGGAAAGCTTAATGCAAT
GCTGGACAATAAAGAGATACAGCAATTTTGTACGCTTAGCGCTGAAGACGCGCAATGGCTTGAGTCCGCGTTAATCAAGC
TAGGGCTTTCTGTGCGTGCATGGCAGCGTTTATTGAAAGTAGCACGCACCATTGCGGACAGTGAGCAGAAAGAAGAGATT
AGTCGTGCACATCTGCAAGAGGCGTTGGGCTATCGAGCAATAGATAGAATGCTGGCGCACCTGCAAAGTCTCATGGCATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.588

100

0.611
  comM Glaesserella parasuis strain SC1401

60.039

100

0.603
  comM Vibrio cholerae strain A1552

60.198

99.802

0.601
  comM Vibrio campbellii strain DS40M4

59.163

99.209

0.587
  comM Legionella pneumophila str. Paris

48.491

98.221

0.476
  comM Legionella pneumophila strain ERS1305867

48.491

98.221

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

99.407

0.441

Multiple sequence alignment