Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AFK65_RS00840 Genome accession   NZ_CP012257
Coordinates   186084..187604 (-) Length   506 a.a.
NCBI ID   WP_007704293.1    Uniprot ID   A0AAC8VM75
Organism   Cronobacter universalis NCTC 9529     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 181084..192604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK65_RS00830 (AFK65_00830) hdfR 184726..185559 (-) 834 WP_201765216.1 HTH-type transcriptional regulator HdfR -
  AFK65_RS00835 (AFK65_00835) - 185667..186005 (+) 339 WP_007704291.1 DUF413 domain-containing protein -
  AFK65_RS00840 (AFK65_00840) comM 186084..187604 (-) 1521 WP_007704293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AFK65_RS20510 ilvL 187955..188053 (+) 99 WP_071601137.1 ilv operon leader peptide -
  AFK65_RS00845 (AFK65_00845) ilvG 188192..189838 (+) 1647 WP_038858371.1 acetolactate synthase 2 catalytic subunit -
  AFK65_RS00850 (AFK65_00850) ilvM 189835..190092 (+) 258 WP_007704300.1 acetolactate synthase 2 small subunit -
  AFK65_RS00855 (AFK65_00855) - 190113..191042 (+) 930 WP_004387276.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54858.18 Da        Isoelectric Point: 8.2813

>NTDB_id=153057 AFK65_RS00840 WP_007704293.1 186084..187604(-) (comM) [Cronobacter universalis NCTC 9529]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKESRDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLHASHLGEYEFVGELALTGALRGVPGAISAAMEALGCKRKIIVAHDNAQEVGLINKEGCLVAHHL
QEVCAFLEGKTTLEPAQPSGFEFRAPAGDLNDVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVALNHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDISIEIPLPPPGMLSQAGQAG
ESSSQVRERVLQSRECQFARQGKLNAMLDNREIRQFCVLSPTDAQWLEAALIKLGLSIRAWQRLLKVARTIADSEQKERI
GREHLQEALSYRAIDRMLAHLQKLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=153057 AFK65_RS00840 WP_007704293.1 186084..187604(-) (comM) [Cronobacter universalis NCTC 9529]
ATGTCGCTATCAGTTATCCATACTCGCGCTGCGCTTGGGGTTAAAGCACCTCTCGTGACGGTCGAGGTTCATATCAGCGC
AGGGCTGCCAGGCCTGACGATTGTCGGCCTGCCGGAAACAACCGTTAAAGAATCCCGGGATCGGGTACGTAGCGCGATCA
TCAATAGTGGTTATGATTTTCCGGCGAAAAAGATCACTATTAATCTTGCCCCTGCCGATCTGCCAAAAGAAGGAGGACGC
TATGATTTGCCAATTGCGATAGCGCTTCTCGCTGCTTCTGAGCAGCTGCACGCATCGCATCTTGGTGAATATGAATTTGT
AGGAGAGCTTGCGCTTACAGGCGCGTTAAGAGGCGTACCCGGCGCTATTTCAGCCGCTATGGAGGCGCTTGGGTGTAAAA
GGAAAATTATCGTCGCGCATGACAATGCGCAAGAAGTTGGGCTCATTAACAAAGAGGGTTGTCTTGTCGCTCATCATTTA
CAGGAGGTCTGTGCTTTTCTTGAAGGGAAAACCACGCTGGAACCTGCTCAGCCATCCGGCTTTGAATTCAGAGCGCCAGC
GGGAGACCTGAACGACGTTATCGGGCAACCGCAGGGAAAGCGCGCACTGGAGTTAACGGCAGCAGGCGGCCATAACTTGC
TGTTTATAGGGCCGCCCGGCACGGGAAAAACGATGCTCGCCAGCAGACTCAATGGGTTACTTCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCCGCAATACTGAGTCTGGTCAATCCCGTCGCATTGAATCATCAGTGGCGTCAGCGGCCATTCAG
AGCCCCTCACCATAGCGCATCGCTGAATGCCATGGTGGGTGGAGGAGCAATACCTGCGCCGGGCGAGATTTCACTGGCTC
ATAATGGCGTGCTTTTCCTTGATGAATTACCTGAGTTTGAGCGGCGGGTGCTGGATGCATTACGCGAACCCATCGAATCC
GGGCAAATTCATCTTTCACGGACGCGGGCGAAATTAACCTATCCGGCGCGCTTTCAGCTTATCGCCGCCATGAACCCCAG
CCCGACAGGACACTACAAAGGGAATCATAACCGCTGCTCGCCAGAACAAACGCTACGTTATCTCGGTCGTCTTTCAGGCC
CCTTTCTCGACAGGTTTGATATCTCAATCGAAATTCCTCTTCCTCCGCCAGGTATGCTTAGTCAGGCGGGACAGGCAGGC
GAAAGCAGCTCACAAGTACGAGAACGGGTACTTCAAAGCCGTGAATGTCAATTTGCACGGCAAGGGAAGCTCAACGCCAT
GCTGGATAATCGGGAGATACGCCAGTTCTGCGTACTTAGCCCGACAGATGCGCAGTGGCTTGAAGCGGCGTTAATTAAAC
TGGGACTATCCATTCGCGCCTGGCAGCGTTTACTTAAAGTAGCGCGCACTATCGCAGATAGCGAACAGAAGGAAAGGATT
GGTCGTGAACATTTGCAGGAAGCGCTGAGTTATCGCGCAATAGACAGGATGCTGGCGCACTTGCAAAAACTTATGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.707

100

0.611
  comM Vibrio campbellii strain DS40M4

60.956

99.209

0.605
  comM Vibrio cholerae strain A1552

60.956

99.209

0.605
  comM Glaesserella parasuis strain SC1401

60.158

100

0.603
  comM Legionella pneumophila str. Paris

48.207

99.209

0.478
  comM Legionella pneumophila strain ERS1305867

48.207

99.209

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445

Multiple sequence alignment