Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACZ81_RS19610 Genome accession   NZ_CP012202
Coordinates   4579530..4581044 (+) Length   504 a.a.
NCBI ID   WP_061486848.1    Uniprot ID   -
Organism   Alteromonas macleodii strain HOT1A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4574530..4586044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACZ81_RS19595 (ACZ81_19590) ilvA 4574858..4576411 (-) 1554 WP_061486846.1 threonine ammonia-lyase, biosynthetic -
  ACZ81_RS19600 (ACZ81_19595) ilvD 4576411..4578261 (-) 1851 WP_061486847.1 dihydroxy-acid dehydratase -
  ACZ81_RS19605 (ACZ81_19600) - 4578704..4579321 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  ACZ81_RS19610 (ACZ81_19605) comM 4579530..4581044 (+) 1515 WP_061486848.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACZ81_RS19615 (ACZ81_19610) ilvY 4581065..4581937 (-) 873 WP_014977812.1 HTH-type transcriptional activator IlvY -
  ACZ81_RS19620 (ACZ81_19615) ilvC 4582095..4583573 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  ACZ81_RS19625 (ACZ81_19620) - 4583707..4584954 (-) 1248 WP_061486849.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54145.82 Da        Isoelectric Point: 6.3644

>NTDB_id=152198 ACZ81_RS19610 WP_061486848.1 4579530..4581044(+) (comM) [Alteromonas macleodii strain HOT1A3]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAANEDIALVYPGDNDVEAALVSHATRYPAFDL
LSVYEHLTGNKKLAKGQPFTSRAPNKTLTGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHADRFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRPD
DSLHATRERVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEDEHAV
SRAHIAEALGYRALDNLIKQLSTS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=152198 ACZ81_RS19610 WP_061486848.1 4579530..4581044(+) (comM) [Alteromonas macleodii strain HOT1A3]
ATGGGAATGGCTGTCGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTGGTCGGTATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGCGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCAGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATTGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTACTTAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGTGAAATAAAGCCGGTTAACGGGCTTATTCCTGTTGTCATGGCAGCCGCAAATGAAGATA
TTGCGCTCGTATATCCGGGGGATAATGACGTAGAGGCTGCATTGGTTTCTCACGCAACGCGCTATCCCGCTTTCGATTTA
CTGTCTGTTTATGAACACCTTACCGGCAACAAAAAGCTCGCCAAAGGCCAGCCGTTTACCTCACGGGCGCCTAACAAAAC
CTTAACAGGGTGGGATGACATTATCGGCCAAGAGCAGGCCAAACGAGCGCTTATTATCGCGGCAAGTGGTGCACATAATC
TTTTGATGGTTGGCCCTCCAGGCACAGGCAAAAGCTTACTCGCCAGCCGAATGCTGTCGCTCTTACCTGATATGAGCGAG
GAAGAGGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGACCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCCACATACCCCGCCAACTTTCAACTAGTAGCGGCGATGAACCC
AAGCCCGACGGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGGTTATCGGGACCAC
TACTTGATAGAATTGATATACAAGTCGAAGTGCCGCGCCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGTTACACGCAACGCGAGAGCGAGTCATTGCAGCTCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGTGC
GCTGCACGCAGGTGAGCTTGCCGATATATGTCTGCTAGATGACGCCGATTTGCAGTTTCTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCAGATCTTGAAGATGAGCACGCCGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCACTAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.167

100

0.542
  comM Vibrio campbellii strain DS40M4

53.175

100

0.532
  comM Glaesserella parasuis strain SC1401

52.174

100

0.524
  comM Haemophilus influenzae Rd KW20

51.378

100

0.518
  comM Legionella pneumophila str. Paris

45.766

98.413

0.45
  comM Legionella pneumophila strain ERS1305867

45.766

98.413

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

100

0.429

Multiple sequence alignment