Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LI67_RS02420 | Genome accession | NZ_CP012162 |
| Coordinates | 349796..350320 (+) | Length | 174 a.a. |
| NCBI ID | WP_008503384.1 | Uniprot ID | A0A156LWB5 |
| Organism | Enterobacter roggenkampii strain 35734 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 344796..355320
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LI67_RS02400 (LI67_002505) | aphA | 345119..345832 (+) | 714 | WP_021242762.1 | acid phosphatase AphA | - |
| LI67_RS02405 (LI67_002510) | - | 345946..346362 (+) | 417 | WP_008503381.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| LI67_RS02410 (LI67_002515) | - | 346365..346718 (+) | 354 | WP_008503382.1 | MmcQ/YjbR family DNA-binding protein | - |
| LI67_RS02415 (LI67_002520) | uvrA | 346722..349544 (-) | 2823 | WP_008503383.1 | excinuclease ABC subunit UvrA | - |
| LI67_RS02420 (LI67_002525) | ssb | 349796..350320 (+) | 525 | WP_008503384.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| LI67_RS02425 (LI67_002530) | - | 350384..350665 (-) | 282 | WP_008503385.1 | YjcB family protein | - |
| LI67_RS02430 (LI67_002535) | - | 351302..352867 (+) | 1566 | WP_023293514.1 | EAL domain-containing protein | - |
| LI67_RS02435 (LI67_002540) | soxS | 352874..353200 (-) | 327 | WP_008503387.1 | superoxide response transcriptional regulator SoxS | - |
| LI67_RS02440 (LI67_002545) | soxR | 353299..353757 (+) | 459 | WP_008503388.1 | redox-sensitive transcriptional activator SoxR | - |
| LI67_RS02445 (LI67_002550) | - | 354121..354792 (+) | 672 | WP_044597315.1 | glutathione S-transferase family protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18593.60 Da Isoelectric Point: 5.2456
>NTDB_id=151982 LI67_RS02420 WP_008503384.1 349796..350320(+) (ssb) [Enterobacter roggenkampii strain 35734]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=151982 LI67_RS02420 WP_008503384.1 349796..350320(+) (ssb) [Enterobacter roggenkampii strain 35734]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.111 |
100 |
0.787 |
| ssb | Glaesserella parasuis strain SC1401 |
57.377 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
47.191 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
47.191 |
100 |
0.483 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.368 |