Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ADJ80_RS02240 Genome accession   NZ_CP012067
Coordinates   459665..461200 (+) Length   511 a.a.
NCBI ID   WP_050692781.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain W10433     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 454665..466200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ80_RS02220 (ADJ80_02230) - 455581..456486 (+) 906 WP_050692777.1 DMT family transporter -
  ADJ80_RS02225 (ADJ80_02235) - 456510..457877 (-) 1368 WP_050692778.1 patatin-like phospholipase family protein -
  ADJ80_RS02230 (ADJ80_02240) deoC 458111..458782 (+) 672 WP_050692779.1 deoxyribose-phosphate aldolase -
  ADJ80_RS02235 (ADJ80_02245) deoR 458807..459556 (+) 750 WP_050692780.1 DNA-binding transcriptional repressor DeoR -
  ADJ80_RS02240 (ADJ80_02250) comM 459665..461200 (+) 1536 WP_050692781.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ADJ80_RS02245 (ADJ80_02255) - 461729..462097 (+) 369 WP_050692782.1 hypothetical protein -
  ADJ80_RS02250 (ADJ80_02260) - 462199..462612 (+) 414 WP_050692783.1 hypothetical protein -
  ADJ80_RS02255 (ADJ80_02265) - 462675..463055 (+) 381 WP_050692784.1 hypothetical protein -
  ADJ80_RS02260 (ADJ80_02270) - 463110..464696 (+) 1587 WP_050692785.1 DUF4384 domain-containing protein -
  ADJ80_RS02265 (ADJ80_02275) - 464714..465799 (+) 1086 WP_050692786.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56083.50 Da        Isoelectric Point: 9.5866

>NTDB_id=151019 ADJ80_RS02240 WP_050692781.1 459665..461200(+) (comM) [Aggregatibacter aphrophilus strain W10433]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPNFTLVGLPEKTVKEAQDRVRSALLNAEFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGYIDAEKLKQFEFVGELALTGQLRAVHGVIPAILAAKKAKRKCIIAYGNANEASLVSDQETYFAHSL
LEVVQFLNNQGELPLAKDMTAQSAVDFSGENQKDLTDIIGQQHAKRALIIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDQEAIETASVASLVQNELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
NTERGEPSASVREKVLKTRTIQLERAGKINAHLTGKEIERDCKLESKDALFLENALTKLGLSVRAYHRILKVSRTIADLE
GEKYITQKHLAEALGYRAMDRLLQRLSKESS

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=151019 ADJ80_RS02240 WP_050692781.1 459665..461200(+) (comM) [Aggregatibacter aphrophilus strain W10433]
ATGTCTTTAGCCATCGTTTACAGTCGTGCTTCAATGGGCGTGCAGGCGCCTTTAGTGACGATTGAAGTGCATTTAAGTAA
CGGCAAACCTAACTTTACGTTGGTTGGATTGCCGGAAAAAACTGTTAAAGAAGCACAAGATCGGGTTCGTAGTGCATTGC
TGAATGCCGAATTCAAATATCCCGCCAAACGCATTACCGTCAATCTCGCACCGGCTGATTTACCCAAAGAAGGCGGACGT
TTTGACTTGCCTATTGCTATCGGTATGCTTGCGGCTTCAGGCTATATTGACGCGGAAAAATTAAAACAATTTGAATTTGT
CGGTGAGTTGGCATTAACCGGTCAACTCCGCGCGGTACATGGGGTAATTCCTGCCATTTTGGCTGCCAAAAAAGCAAAAC
GAAAATGTATTATCGCTTATGGCAATGCCAATGAGGCCTCATTGGTCTCCGATCAAGAAACGTATTTTGCCCATTCATTA
CTTGAAGTTGTGCAATTTCTCAATAATCAAGGGGAGTTGCCTTTAGCAAAGGACATGACGGCTCAAAGTGCGGTGGATTT
TAGCGGCGAAAATCAAAAAGATCTCACGGATATTATCGGTCAACAACACGCCAAACGGGCGCTGATTATTGCCGCAGCCG
GGCAACATAACTTGTTATTTCTGGGCCCACCTGGCACTGGTAAAACCATGCTTGCCAGTCGTTTAACGGGGCTGTTACCG
GAAATGACCGACCAAGAGGCCATCGAAACTGCCTCCGTTGCCAGTCTCGTGCAAAATGAACTCAATTTTCATAACTGGAA
ACAACGCCCTTTCCGCGCCCCACATCACAGCGCGTCCACGCCGGCTTTAGTGGGAGGCGGAACAATTCCAAAACCCGGCG
AAATTTCTCTCGCGCATAATGGTGTGCTTTTTTTAGACGAACTGCCTGAATTTGAACGTAAGGTGCTGGATGCTTTACGC
CAACCGTTAGAAAGTGGAGAAATCATTATTTCGCGTGCCAATGCCAAAATTCAGTTTCCGGCAAGGTTTCAGCTTATCGC
GGCGATGAACCCAAGCCCAACGGGGCATTATCAAGGGACACACAATCGTACGTCGCCGCAACAAATCATGCGGTATTTAA
ATCGTCTCTCCGGACCATTTCTGGATCGTTTTGATTTATCCATTGAAGTGCCTTTATTGCCACAAGGCAGCTTACAAAAT
AATACAGAGCGTGGTGAACCTAGTGCAAGCGTTCGTGAAAAAGTATTAAAAACCCGTACCATTCAATTAGAACGTGCAGG
CAAAATAAACGCCCATTTAACCGGTAAAGAAATTGAACGCGATTGTAAACTGGAAAGCAAAGACGCATTATTTCTCGAAA
ATGCCCTGACCAAACTAGGGCTTTCTGTACGGGCTTACCACCGAATCTTAAAAGTGTCACGCACCATTGCTGATTTAGAA
GGTGAAAAATACATTACCCAAAAACATTTGGCTGAAGCATTAGGCTACCGAGCAATGGATCGGTTATTGCAGAGGCTATC
GAAAGAATCAAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

87.377

99.217

0.867
  comM Glaesserella parasuis strain SC1401

78.641

100

0.793
  comM Vibrio campbellii strain DS40M4

64.854

100

0.654
  comM Vibrio cholerae strain A1552

65.098

99.804

0.65
  comM Legionella pneumophila str. Paris

51.19

98.63

0.505
  comM Legionella pneumophila strain ERS1305867

51.19

98.63

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.638

99.413

0.474

Multiple sequence alignment