Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ADJ80_RS00030 | Genome accession | NZ_CP012067 |
| Coordinates | 4923..6161 (+) | Length | 412 a.a. |
| NCBI ID | WP_050692439.1 | Uniprot ID | - |
| Organism | Aggregatibacter aphrophilus strain W10433 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1..11161
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADJ80_RS00010 (ADJ80_00010) | nanQ | 1425..1895 (+) | 471 | WP_050692437.1 | N-acetylneuraminate anomerase | - |
| ADJ80_RS00015 (ADJ80_00015) | ampD | 2368..2922 (-) | 555 | WP_050694142.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ADJ80_RS00020 (ADJ80_00020) | pilA | 3047..3496 (+) | 450 | WP_050692438.1 | pilin | Machinery gene |
| ADJ80_RS00025 (ADJ80_00025) | pilB | 3521..4930 (+) | 1410 | WP_005704570.1 | GspE/PulE family protein | Machinery gene |
| ADJ80_RS00030 (ADJ80_00030) | pilC | 4923..6161 (+) | 1239 | WP_050692439.1 | type II secretion system F family protein | Machinery gene |
| ADJ80_RS00035 (ADJ80_00035) | - | 6158..6850 (+) | 693 | WP_050692440.1 | prepilin peptidase | - |
| ADJ80_RS00040 (ADJ80_00040) | coaE | 6903..7523 (+) | 621 | WP_050692441.1 | dephospho-CoA kinase | - |
| ADJ80_RS00045 (ADJ80_00045) | yacG | 7516..7728 (+) | 213 | WP_005701268.1 | DNA gyrase inhibitor YacG | - |
| ADJ80_RS00050 (ADJ80_00050) | - | 7728..7994 (+) | 267 | WP_005704566.1 | GNAT family N-acetyltransferase | - |
| ADJ80_RS00055 (ADJ80_00055) | - | 8362..9735 (+) | 1374 | WP_050692442.1 | alanine/glycine:cation symporter family protein | - |
| ADJ80_RS00060 (ADJ80_00060) | raiA | 9962..10285 (+) | 324 | WP_050692443.1 | ribosome-associated translation inhibitor RaiA | - |
Sequence
Protein
Download Length: 412 a.a. Molecular weight: 46765.32 Da Isoelectric Point: 10.3390
>NTDB_id=151013 ADJ80_RS00030 WP_050692439.1 4923..6161(+) (pilC) [Aggregatibacter aphrophilus strain W10433]
MRKLKLFNWHGVNRLQQKQKGTIVAESAVIAQQQLMSRGLQHIKLQQNWQLNSKPKNAEVCALLSQLATLLQAAVPLKNS
LQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEKQNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALAL
QRKIRKILLYPVLVLGISLILTALLLLFIVPQFAAMYDNSSAQLPTFTQVLLTLSQGLQDYWLHLLICMALTTLFIRARL
KHSPWFNRQKIRLINAMPVLNRIVQLSRLVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSIL
HWLQQGYAFSASVSGHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVIIGGLIGLIMLGM
YLPIFNMGALVQ
MRKLKLFNWHGVNRLQQKQKGTIVAESAVIAQQQLMSRGLQHIKLQQNWQLNSKPKNAEVCALLSQLATLLQAAVPLKNS
LQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEKQNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALAL
QRKIRKILLYPVLVLGISLILTALLLLFIVPQFAAMYDNSSAQLPTFTQVLLTLSQGLQDYWLHLLICMALTTLFIRARL
KHSPWFNRQKIRLINAMPVLNRIVQLSRLVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSIL
HWLQQGYAFSASVSGHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVIIGGLIGLIMLGM
YLPIFNMGALVQ
Nucleotide
Download Length: 1239 bp
>NTDB_id=151013 ADJ80_RS00030 WP_050692439.1 4923..6161(+) (pilC) [Aggregatibacter aphrophilus strain W10433]
ATGCGTAAACTGAAATTATTTAACTGGCACGGGGTTAACCGTCTACAGCAAAAGCAGAAAGGCACTATCGTGGCGGAAAG
CGCCGTGATAGCACAACAACAGCTGATGTCACGCGGTTTACAACACATTAAACTGCAACAAAATTGGCAATTAAACAGCA
AGCCTAAAAACGCCGAAGTCTGTGCGTTGCTTTCTCAGTTGGCGACCTTATTACAAGCGGCGGTTCCGTTAAAAAATAGT
CTGCAAATTTTGTTGCAACATTGCACCAATATTGCGCTAAACGCTTGGTTGCGCCAACTTTTAAAGGATATTGAAAGCGG
TTTGGCATTTTCCCAAGCCTTAGAAAAACAAAACGTAGAAAAACAAAATCAATATTTGACCTATCAAGATCGCCAATTGA
TTAAAGTCGGTGAAATGACGGGCAAGTTACCCACCGTATGCCATGAAATTGCGCAACACAAACAGCAGGCATTGGCGTTG
CAACGCAAGATTCGAAAAATTCTGCTTTACCCGGTATTAGTGCTTGGCATATCGCTGATTTTAACCGCACTTTTACTGCT
ATTTATCGTGCCGCAATTCGCCGCGATGTATGACAACAGTAGCGCGCAACTCCCGACTTTCACCCAAGTGCTACTCACAC
TGTCGCAAGGATTACAGGATTATTGGCTGCATCTGTTGATTTGTATGGCATTGACTACCCTATTTATTCGCGCCCGCCTA
AAGCACTCCCCTTGGTTTAATCGGCAAAAAATTCGATTAATCAATGCCATGCCTGTACTGAATCGCATCGTGCAACTTTC
CCGTTTGGTGGGATTTAGCCGCAGTTTATTTTTAATGTTACAGGCGGGCGTGCCGCTGAATCAGGCTTTGCAGTCGTTTT
TACCACAAAATCCAAGTTGGCAAAGATCGCCAAACGTGCAAGGCGATTGGCTATTAATCGAAGAAGTGCAATCCATTTTA
CACTGGCTACAACAAGGTTATGCCTTCTCCGCCAGTGTGAGCGGTCATATTTTTCCGTTGGCGGCACAACAAATGCTACA
GGTGGGCGAACAAAGTGGTCAGCTCCCTAAAATGTTGCAATTTATTGCCAACGACCATCAACAACAATTGGACTATCAGA
TCGATCTGCTGTCACAAATGCTGGAGCCGCTATTGATGGTCATTATCGGTGGGCTTATCGGCTTAATTATGCTCGGAATG
TATTTGCCGATTTTCAATATGGGCGCGTTAGTGCAATGA
ATGCGTAAACTGAAATTATTTAACTGGCACGGGGTTAACCGTCTACAGCAAAAGCAGAAAGGCACTATCGTGGCGGAAAG
CGCCGTGATAGCACAACAACAGCTGATGTCACGCGGTTTACAACACATTAAACTGCAACAAAATTGGCAATTAAACAGCA
AGCCTAAAAACGCCGAAGTCTGTGCGTTGCTTTCTCAGTTGGCGACCTTATTACAAGCGGCGGTTCCGTTAAAAAATAGT
CTGCAAATTTTGTTGCAACATTGCACCAATATTGCGCTAAACGCTTGGTTGCGCCAACTTTTAAAGGATATTGAAAGCGG
TTTGGCATTTTCCCAAGCCTTAGAAAAACAAAACGTAGAAAAACAAAATCAATATTTGACCTATCAAGATCGCCAATTGA
TTAAAGTCGGTGAAATGACGGGCAAGTTACCCACCGTATGCCATGAAATTGCGCAACACAAACAGCAGGCATTGGCGTTG
CAACGCAAGATTCGAAAAATTCTGCTTTACCCGGTATTAGTGCTTGGCATATCGCTGATTTTAACCGCACTTTTACTGCT
ATTTATCGTGCCGCAATTCGCCGCGATGTATGACAACAGTAGCGCGCAACTCCCGACTTTCACCCAAGTGCTACTCACAC
TGTCGCAAGGATTACAGGATTATTGGCTGCATCTGTTGATTTGTATGGCATTGACTACCCTATTTATTCGCGCCCGCCTA
AAGCACTCCCCTTGGTTTAATCGGCAAAAAATTCGATTAATCAATGCCATGCCTGTACTGAATCGCATCGTGCAACTTTC
CCGTTTGGTGGGATTTAGCCGCAGTTTATTTTTAATGTTACAGGCGGGCGTGCCGCTGAATCAGGCTTTGCAGTCGTTTT
TACCACAAAATCCAAGTTGGCAAAGATCGCCAAACGTGCAAGGCGATTGGCTATTAATCGAAGAAGTGCAATCCATTTTA
CACTGGCTACAACAAGGTTATGCCTTCTCCGCCAGTGTGAGCGGTCATATTTTTCCGTTGGCGGCACAACAAATGCTACA
GGTGGGCGAACAAAGTGGTCAGCTCCCTAAAATGTTGCAATTTATTGCCAACGACCATCAACAACAATTGGACTATCAGA
TCGATCTGCTGTCACAAATGCTGGAGCCGCTATTGATGGTCATTATCGGTGGGCTTATCGGCTTAATTATGCTCGGAATG
TATTTGCCGATTTTCAATATGGGCGCGTTAGTGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae Rd KW20 |
60.049 |
99.029 |
0.595 |
| pilC | Haemophilus influenzae 86-028NP |
59.804 |
99.029 |
0.592 |
| pilC | Glaesserella parasuis strain SC1401 |
40.049 |
100 |
0.4 |