Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AC611_RS20975 Genome accession   NZ_CP012057
Coordinates   4571309..4572829 (+) Length   506 a.a.
NCBI ID   WP_127446602.1    Uniprot ID   A0A3T0G3M2
Organism   Xanthomonas phaseoli pv. phaseoli strain ISO98C12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4566309..4577829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC611_RS20950 (AC611_19960) - 4567155..4567811 (+) 657 WP_039573547.1 RIO1 family regulatory kinase/ATPase -
  AC611_RS20955 (AC611_19965) - 4568018..4570003 (-) 1986 WP_039573544.1 beta-N-acetylglucosaminidase domain-containing protein -
  AC611_RS20965 (AC611_19970) - 4570487..4570861 (-) 375 WP_008574841.1 P-II family nitrogen regulator -
  AC611_RS20970 (AC611_19975) - 4571015..4571293 (+) 279 WP_017156738.1 accessory factor UbiK family protein -
  AC611_RS20975 (AC611_19980) comM 4571309..4572829 (+) 1521 WP_127446602.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AC611_RS20980 (AC611_19985) - 4573168..4573665 (+) 498 WP_039568534.1 lipocalin family protein -
  AC611_RS20985 (AC611_19990) - 4573893..4574069 (-) 177 WP_017158194.1 hypothetical protein -
  AC611_RS20990 (AC611_19995) - 4574448..4576010 (+) 1563 WP_039568533.1 EAL domain-containing protein -
  AC611_RS20995 (AC611_20000) - 4576075..4577196 (-) 1122 WP_017158196.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53989.70 Da        Isoelectric Point: 8.5251

>NTDB_id=150941 AC611_RS20975 WP_127446602.1 4571309..4572829(+) (comM) [Xanthomonas phaseoli pv. phaseoli strain ISO98C12]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPSDLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASPVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARASRSVDFPARFQLIAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGENSASVRTRVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=150941 AC611_RS20975 WP_127446602.1 4571309..4572829(+) (comM) [Xanthomonas phaseoli pv. phaseoli strain ISO98C12]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTACCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGTCCGATCTACCGAAAGAAGGCGGCCGG
TTCGACCTGCCGATCGCTCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCATTGGCGGCCGCGCAGGCCGGGC
GTCGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGATGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCTGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTACGCGGCCAACCGCACGCACGTCGCGCGCTGGAGATCGCCGCCGCCGGTGGGCATCATC
TATTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAGGCCAGCGAA
GCAGAGGCACTGGAAACCGCAGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCCCAGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCTTGGAAGTGTTGCGCGAGCCACTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGTCACGCAGCGTGGATTTTCCGGCGCGCTTCCAACTAATCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGTCGCTACCGCAGCCGCA
TCTCGGGCCCGTTGCTGGACCGCATCGACCTGCATGTGGAAGTGCCGCGCCTTCCGCCTCAGGCGCTGCGCAGCGGCAAC
CTTGGTGAAAACAGCGCCAGCGTGCGGACGCGCGTGGTCGCCGCACGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCACGCACCATCGCCGATCTCGACGACAGCCCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0G3M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.731

100

0.557
  comM Haemophilus influenzae Rd KW20

54.795

100

0.553
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Vibrio campbellii strain DS40M4

53.557

100

0.536
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.882

100

0.451

Multiple sequence alignment