NTDB

Overview

Name	ciaR	Type	Regulator
Locus tag	PA1088_RS12080	Genome accession	NZ_CP015001
Coordinates	2568676..2569347 (+)	Length	223 a.a.
NCBI ID	WP_003090494.1	Uniprot ID	A0A0H2ZC88
Organism	Pseudomonas aeruginosa strain PA1088
Function	repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2563676..2574347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA1088_RS12045 (PA1088_02405)	ppyR	2564149..2564406 (+)	258	WP_003090502.1	psl/pyoverdine operon transcriptional regulator PpyR	-
PA1088_RS12050 (PA1088_02406)	-	2564393..2565586 (+)	1194	WP_019726389.1	NnrS family protein	-
PA1088_RS12055 (PA1088_02407)	-	2565587..2565853 (-)	267	WP_003115326.1	DUF5329 domain-containing protein	-
PA1088_RS12060 (PA1088_02408)	-	2565837..2566730 (-)	894	WP_003116712.1	hypothetical protein	-
PA1088_RS12065 (PA1088_02409)	-	2566757..2567839 (-)	1083	WP_003113385.1	hypothetical protein	-
PA1088_RS12070 (PA1088_02410)	-	2568054..2568362 (+)	309	WP_003090497.1	PepSY domain-containing protein	-
PA1088_RS12075 (PA1088_02411)	-	2568362..2568676 (+)	315	WP_003097704.1	PepSY domain-containing protein	-
PA1088_RS12080 (PA1088_02412)	ciaR	2568676..2569347 (+)	672	WP_003090494.1	two-component system response regulator CarR	Regulator
PA1088_RS12085 (PA1088_02413)	carS	2569344..2570681 (+)	1338	WP_003090493.1	two-component system sensor histidine kinase CarS	-
PA1088_RS12090 (PA1088_02414)	-	2570772..2571080 (+)	309	WP_003116713.1	hypothetical protein	-
PA1088_RS12095 (PA1088_02415)	-	2571085..2573229 (-)	2145	WP_003113383.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24729.20 Da Isoelectric Point: 5.8445

                                >NTDB_id=150755 PA1088_RS12080 WP_003090494.1 2568676..2569347(+) (ciaR) [Pseudomonas aeruginosa strain PA1088]

MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA

RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR

YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide

Download Length: 672 bp

                                >NTDB_id=150755 PA1088_RS12080 WP_003090494.1 2568676..2569347(+) (ciaR) [Pseudomonas aeruginosa strain PA1088]

ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT

GGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGACCTGATCATCCTCGACCTCGGCC

TGCCCGGGCGCCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGGCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG

CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTATCTGACCAAGCCGTTCCATCCGGAAGA

GTTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC

GCCTGGACGAGCAGCGTCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC

TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA

TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG

GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZC88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ciaR	Streptococcus mutans UA159	37.727	98.655	0.372
ciaR	Streptococcus pneumoniae Rx1	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae D39	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae R6	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae TIGR4	37.273	98.655	0.368
micA	Streptococcus pneumoniae Cp1015	35.683	100	0.363
vicR	Streptococcus mutans UA159	35.526	100	0.363

Detailed information NTG0150755