NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	BaDB11_RS05620	Genome accession	NZ_CP014795
Coordinates	1010436..1011110 (-)	Length	224 a.a.
NCBI ID	WP_003184045.1	Uniprot ID	Q65GL3
Organism	Bacillus licheniformis strain SCK B11
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1005436..1016110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BaDB11_RS05585 (BaDB11_01125)	-	1005544..1005975 (+)	432	WP_369878943.1	SRPBCC family protein	-
BaDB11_RS05590 (BaDB11_01126)	-	1006035..1006295 (+)	261	WP_202604349.1	ArsR/SmtB family transcription factor	-
BaDB11_RS05595 (BaDB11_01127)	minD	1006340..1007146 (-)	807	WP_003184035.1	septum site-determining protein MinD	-
BaDB11_RS05600 (BaDB11_01128)	minC	1007149..1007829 (-)	681	WP_011198163.1	septum site-determining protein MinC	-
BaDB11_RS05605 (BaDB11_01129)	mreD	1007884..1008402 (-)	519	WP_003184039.1	rod shape-determining protein MreD	-
BaDB11_RS05610 (BaDB11_01130)	mreC	1008399..1009307 (-)	909	WP_003184040.1	rod shape-determining protein MreC	-
BaDB11_RS05615 (BaDB11_01131)	-	1009338..1010348 (-)	1011	WP_003184042.1	rod shape-determining protein	-
BaDB11_RS05620 (BaDB11_01132)	ysxA/radC	1010436..1011110 (-)	675	WP_003184045.1	RadC family protein	Machinery gene
BaDB11_RS05625 (BaDB11_01133)	-	1011165..1011737 (-)	573	WP_003184048.1	Maf family protein	-
BaDB11_RS05630 (BaDB11_01134)	-	1011891..1012922 (-)	1032	WP_003184050.1	SPOR domain-containing protein	-
BaDB11_RS05635 (BaDB11_01135)	comC	1013126..1013905 (-)	780	WP_016886351.1	prepilin peptidase	Machinery gene
BaDB11_RS05640 (BaDB11_01136)	-	1014018..1015316 (-)	1299	WP_009329287.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-

Sequence

Protein

Download Length: 224 a.a. Molecular weight: 25239.11 Da Isoelectric Point: 8.3107

                                >NTDB_id=150159 BaDB11_RS05620 WP_003184045.1 1010436..1011110(-) (ysxA/radC) [Bacillus licheniformis strain SCK B11]

MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV

QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE

ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide

Download Length: 675 bp

                                >NTDB_id=150159 BaDB11_RS05620 WP_003184045.1 1010436..1011110(-) (ysxA/radC) [Bacillus licheniformis strain SCK B11]

TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA

TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT

TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG

CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA

AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA

ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA

GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT

AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA

AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q65GL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	80.804	100	0.808
radC	Streptococcus pneumoniae TIGR4	46.667	93.75	0.438
radC	Streptococcus pneumoniae R6	46.19	93.75	0.433
radC	Streptococcus pneumoniae D39	46.19	93.75	0.433
radC	Streptococcus gordonii str. Challis substr. CH1	44.762	93.75	0.42

Detailed information NTG0150159