Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BaDB11_RS05635 Genome accession   NZ_CP014795
Coordinates   1013126..1013905 (-) Length   259 a.a.
NCBI ID   WP_016886351.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCK B11     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008126..1018905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS05610 (BaDB11_01130) mreC 1008399..1009307 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  BaDB11_RS05615 (BaDB11_01131) - 1009338..1010348 (-) 1011 WP_003184042.1 rod shape-determining protein -
  BaDB11_RS05620 (BaDB11_01132) ysxA/radC 1010436..1011110 (-) 675 WP_003184045.1 RadC family protein Machinery gene
  BaDB11_RS05625 (BaDB11_01133) - 1011165..1011737 (-) 573 WP_003184048.1 Maf family protein -
  BaDB11_RS05630 (BaDB11_01134) - 1011891..1012922 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  BaDB11_RS05635 (BaDB11_01135) comC 1013126..1013905 (-) 780 WP_016886351.1 prepilin peptidase Machinery gene
  BaDB11_RS05640 (BaDB11_01136) - 1014018..1015316 (-) 1299 WP_009329287.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BaDB11_RS05645 (BaDB11_01137) - 1015398..1018040 (-) 2643 WP_009329289.1 valine--tRNA ligase -
  BaDB11_RS05650 (BaDB11_01138) - 1018502..1018693 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28117.93 Da        Isoelectric Point: 8.9928

>NTDB_id=150160 BaDB11_RS05635 WP_016886351.1 1013126..1013905(-) (comC) [Bacillus licheniformis strain SCK B11]
MKFDSARLITMFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLS
IVYPAVELSAAILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSG
AMAGGMLPLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTL
TSCFYGEPMIEWYLQTAWW

Nucleotide


Download         Length: 780 bp        

>NTDB_id=150160 BaDB11_RS05635 WP_016886351.1 1013126..1013905(-) (comC) [Bacillus licheniformis strain SCK B11]
ATGAAATTTGATTCTGCGAGGTTGATAACGATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTT
TAATTCGGCCGGGCGCCGCATTCCTGAAAAGATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGC
TGGGCTTCTCGGAGCTGATACCGGTTTTGTCCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCG
ATCGTGTATCCGGCAGTTGAGCTCTCCGCCGCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCT
GGTGATTGTGCTTGCTCTTATATCTCTGCTTTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTG
TTCTTTGTTTTTTCCTGCCTGTCTTTGCCGTCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGT
GCGATGGCCGGCGGTATGCTGCCCCTCTTGACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTT
TGCGGTAATCGGCATGGCGCTCGGCAGCCGCCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTG
GTCTTATTGCACTCCTGGCAGGCAAACTGAAGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTG
ACGAGCTGCTTCTATGGCGAACCAATGATCGAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-100)

Type IV leader peptidase family (Peptidase_A24)

(112-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.347

93.436

0.452