Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | A1R12_RS12665 | Genome accession | NZ_CP014783 |
| Coordinates | 2664683..2665687 (-) | Length | 334 a.a. |
| NCBI ID | WP_061890745.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain B15 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2659683..2670687
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A1R12_RS12635 (A1R12_12635) | - | 2660711..2661367 (-) | 657 | WP_003152699.1 | DUF421 domain-containing protein | - |
| A1R12_RS12640 (A1R12_12640) | - | 2661534..2661920 (+) | 387 | WP_003152697.1 | TIGR04086 family membrane protein | - |
| A1R12_RS12645 (A1R12_12645) | yajC | 2661972..2662232 (-) | 261 | WP_007408187.1 | preprotein translocase subunit YajC | - |
| A1R12_RS12650 (A1R12_12650) | tgt | 2662263..2663408 (-) | 1146 | WP_007408186.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| A1R12_RS12655 (A1R12_12655) | queA | 2663436..2664464 (-) | 1029 | WP_003152692.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| A1R12_RS12660 (A1R12_12660) | - | 2664490..2664690 (-) | 201 | WP_031378914.1 | DUF2905 domain-containing protein | - |
| A1R12_RS12665 (A1R12_12665) | ruvB | 2664683..2665687 (-) | 1005 | WP_061890745.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| A1R12_RS12670 (A1R12_12670) | ruvA | 2665698..2666303 (-) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| A1R12_RS12675 (A1R12_12675) | - | 2666438..2666947 (-) | 510 | WP_015417917.1 | intercompartmental signaling factor BofC | - |
| A1R12_RS20810 | - | 2667080..2667199 (-) | 120 | WP_007612850.1 | hypothetical protein | - |
| A1R12_RS12685 (A1R12_12685) | - | 2667333..2667926 (-) | 594 | WP_014721606.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| A1R12_RS12690 (A1R12_12690) | safA | 2668075..2669262 (-) | 1188 | WP_015417918.1 | SafA/ExsA family spore coat assembly protein | - |
| A1R12_RS12695 (A1R12_12695) | nadA | 2669389..2670492 (-) | 1104 | WP_012118097.1 | quinolinate synthase NadA | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37238.60 Da Isoelectric Point: 4.9033
>NTDB_id=149703 A1R12_RS12665 WP_061890745.1 2664683..2665687(-) (ruvB) [Bacillus amyloliquefaciens strain B15]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRIVTP
AVYEHFRLEAPARD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRIVTP
AVYEHFRLEAPARD
Nucleotide
Download Length: 1005 bp
>NTDB_id=149703 A1R12_RS12665 WP_061890745.1 2664683..2665687(-) (ruvB) [Bacillus amyloliquefaciens strain B15]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACTGCTGACGTTTTTGAAGTGGATATCGAAAAAGCACCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGATGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTTGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTTCAGAGGACGCCGAGGGGACGGATCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACTGCTGACGTTTTTGAAGTGGATATCGAAAAAGCACCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGATGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTTGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTTCAGAGGACGCCGAGGGGACGGATCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
92.515 |
100 |
0.925 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.429 |
97.605 |
0.59 |
| ruvB | Streptococcus pneumoniae R6 |
60.429 |
97.605 |
0.59 |
| ruvB | Streptococcus pneumoniae D39 |
60.429 |
97.605 |
0.59 |
| ruvB | Synechocystis sp. PCC 6803 |
58.663 |
98.503 |
0.578 |
| ruvB | Helicobacter pylori 26695 |
53.049 |
98.204 |
0.521 |