Detailed information NTG0149704

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: A1R12_RS12670
• Genome accession: NZ_CP014783
• Coordinates: 2665698..2666303 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain B15
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2660698..2671303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A1R12_RS12635 (A1R12_12635)	-	2660711..2661367 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
A1R12_RS12640 (A1R12_12640)	-	2661534..2661920 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
A1R12_RS12645 (A1R12_12645)	yajC	2661972..2662232 (-)	261	WP_007408187.1	preprotein translocase subunit YajC	-
A1R12_RS12650 (A1R12_12650)	tgt	2662263..2663408 (-)	1146	WP_007408186.1	tRNA guanosine(34) transglycosylase Tgt	-
A1R12_RS12655 (A1R12_12655)	queA	2663436..2664464 (-)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
A1R12_RS12660 (A1R12_12660)	-	2664490..2664690 (-)	201	WP_031378914.1	DUF2905 domain-containing protein	-
A1R12_RS12665 (A1R12_12665)	ruvB	2664683..2665687 (-)	1005	WP_061890745.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
A1R12_RS12670 (A1R12_12670)	ruvA	2665698..2666303 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
A1R12_RS12675 (A1R12_12675)	-	2666438..2666947 (-)	510	WP_015417917.1	intercompartmental signaling factor BofC	-
A1R12_RS20810	-	2667080..2667199 (-)	120	WP_007612850.1	hypothetical protein	-
A1R12_RS12685 (A1R12_12685)	-	2667333..2667926 (-)	594	WP_014721606.1	YhcN/YlaJ family sporulation lipoprotein	-
A1R12_RS12690 (A1R12_12690)	safA	2668075..2669262 (-)	1188	WP_015417918.1	SafA/ExsA family spore coat assembly protein	-
A1R12_RS12695 (A1R12_12695)	nadA	2669389..2670492 (-)	1104	WP_012118097.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=149704 A1R12_RS12670 WP_003152683.1 2665698..2666303(-) (ruvA) [Bacillus amyloliquefaciens strain B15]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=149704 A1R12_RS12670 WP_003152683.1 2665698..2666303(-) (ruvA) [Bacillus amyloliquefaciens strain B15]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGTTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGATG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTTACAAAGCTGCTGAACGTCACCGGCATCGGGCCG
AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408