Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ABU16_RS17145 Genome accession   NZ_CP011882
Coordinates   3332723..3333019 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain TO-A JPC     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3327723..3338019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS17100 (ABU16_3398) tasA 3328131..3328916 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  ABU16_RS17105 (ABU16_3399) sipW 3328980..3329552 (-) 573 WP_003230181.1 signal peptidase I -
  ABU16_RS17110 (ABU16_3400) tapA 3329536..3330297 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  ABU16_RS17115 (ABU16_3401) yqzG 3330569..3330895 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ABU16_RS17120 (ABU16_3402) spoIIT 3330937..3331116 (-) 180 WP_003230176.1 YqzE family protein -
  ABU16_RS17125 (ABU16_3403) comGG 3331187..3331561 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  ABU16_RS17130 (ABU16_3404) comGF 3331562..3331945 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  ABU16_RS17135 (ABU16_3405) comGE 3331971..3332318 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ABU16_RS17140 (ABU16_3406) comGD 3332302..3332733 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ABU16_RS17145 (ABU16_3407) comGC 3332723..3333019 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ABU16_RS17150 (ABU16_3408) comGB 3333033..3334070 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  ABU16_RS17155 (ABU16_3409) comGA 3334057..3335127 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ABU16_RS22935 (ABU16_3410) - 3335338..3335463 (-) 126 WP_003230155.1 hypothetical protein -
  ABU16_RS17170 (ABU16_3411) corA 3335529..3336482 (-) 954 WP_032677123.1 magnesium transporter CorA -
  ABU16_RS17175 (ABU16_3412) yqhB 3336625..3337953 (+) 1329 WP_003230150.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=149201 ABU16_RS17145 WP_003230162.1 3332723..3333019(-) (comGC) [Bacillus subtilis strain TO-A JPC]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=149201 ABU16_RS17145 WP_003230162.1 3332723..3333019(-) (comGC) [Bacillus subtilis strain TO-A JPC]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment