Detailed information NTG0148956

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: CDIF27639_RS03830
• Genome accession: NZ_CP011847
• Coordinates: 754634..755341 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain DSM 27639
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 749634..760341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDIF27639_RS03800 (CDIF27639_00743)	cdd1	750429..750674 (+)	246	WP_009888450.1	protein Cdd1	-
CDIF27639_RS03805 (CDIF27639_00744)	-	750892..751161 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
CDIF27639_RS03815 (CDIF27639_00745)	-	752039..752776 (-)	738	WP_011860906.1	ABC transporter permease	-
CDIF27639_RS03820 (CDIF27639_00746)	-	752788..753549 (-)	762	WP_011860907.1	ABC transporter permease	-
CDIF27639_RS03825 (CDIF27639_00747)	-	753549..754472 (-)	924	WP_031280291.1	ABC transporter ATP-binding protein	-
CDIF27639_RS03830 (CDIF27639_00748)	scnR	754634..755341 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
CDIF27639_RS03835 (CDIF27639_00749)	-	755386..756792 (+)	1407	WP_011860909.1	sensor histidine kinase	-
CDIF27639_RS03840 (CDIF27639_00750)	-	758554..758943 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=148956 CDIF27639_RS03830 WP_009888460.1 754634..755341(+) (scnR) [Clostridioides difficile strain DSM 27639]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=148956 CDIF27639_RS03830 WP_009888460.1 754634..755341(+) (scnR) [Clostridioides difficile strain DSM 27639]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379