Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB870_RS02265 Genome accession   NZ_CP011807
Coordinates   504376..505914 (-) Length   512 a.a.
NCBI ID   WP_047906770.1    Uniprot ID   A0A0H3WWF8
Organism   Pandoraea faecigallinarum strain DSM 23572     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499376..510914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB870_RS02245 (AB870_13745) - 500630..501982 (+) 1353 WP_418303981.1 sigma-54-dependent transcriptional regulator -
  AB870_RS02250 (AB870_13750) - 502043..502567 (-) 525 WP_047906769.1 TlpA disulfide reductase family protein -
  AB870_RS27010 (AB870_13755) - 502624..503244 (-) 621 WP_157112205.1 thioredoxin -
  AB870_RS27015 - 503347..504267 (+) 921 WP_237170027.1 hypothetical protein -
  AB870_RS02265 (AB870_13765) comM 504376..505914 (-) 1539 WP_047906770.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB870_RS02270 (AB870_13770) - 506350..506598 (-) 249 WP_157112206.1 accessory factor UbiK family protein -
  AB870_RS02275 (AB870_13775) - 506994..507827 (+) 834 WP_047906772.1 TorF family putative porin -
  AB870_RS02280 (AB870_13780) - 507841..508179 (+) 339 WP_047906773.1 P-II family nitrogen regulator -
  AB870_RS02285 (AB870_13785) amt 508205..509719 (+) 1515 WP_047906774.1 ammonium transporter -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54142.97 Da        Isoelectric Point: 8.0716

>NTDB_id=148823 AB870_RS02265 WP_047906770.1 504376..505914(-) (comM) [Pandoraea faecigallinarum strain DSM 23572]
MSLAVVSSRAITGMAARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITINLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRPIRGGLAMASAIAAEPSARALVLPTGSAHEAALVEEATVYGAC
TLLDVCAHLAEPDVATPLPRAAVPRALGCETASAVEQTADIADMIDIRGQSHAKRALEVAAAGGHHILLHGPPGTGRSML
AMRLPGLLPSLSKAQAVETATLASLSTQGFDMRHWGRRPFRAPHHTASAAALVGGGSTPRPGEISLAHRGVLFLDELPEF
QRRVLEVLREPLELGHVTISRAGSHATFPAAFQLVAAMNPCPCGDFGHPSRNCRCTGEAVARYRNRLSGPLLDRIDLHVE
VPALDAQTFAAPASGERSADVAARVGRAQARQLSRQGRLNCGLSSRALETQCPLAPEAKEVLHRAVAQHHWSARTYHRVL
RVARTIADLAGHDAIGVPQITEAVQYREITIS

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=148823 AB870_RS02265 WP_047906770.1 504376..505914(-) (comM) [Pandoraea faecigallinarum strain DSM 23572]
ATGTCATTGGCAGTTGTCAGCAGCCGGGCGATTACCGGGATGGCGGCGCGTCCGGTCACGGTGGAAGTGCATCTGGCGAA
CGGCTTGCCCGGCTTGTCGCTGGTCGGTCTGCCCGATACGGAAGTCAAGGAAAGCCGGGAGCGCGTGCGCTCGGCCTTAC
AGAACAGCCGCTTCGAATTTCCGGCCCGGCGCATCACCATCAATCTGGCCCCGGCGGATTTGCCGAAGGCGTCGGGCTGC
TTCGATCTGCCGATTGCGCTCGGCATTCTGGCCGCGAGCGGTCAGTTGCCTGAGGCCGGGCTGCGTACGCACGAGTTCGC
GGGAGAGTTGTCGCTTACCGGCGAACTGCGCCCGATACGCGGCGGACTGGCCATGGCAAGTGCCATCGCGGCGGAGCCGT
CGGCACGAGCGCTAGTACTGCCAACGGGCAGCGCGCATGAAGCCGCGCTGGTGGAAGAAGCGACGGTCTACGGCGCATGC
ACGCTGCTCGATGTCTGCGCTCACCTTGCCGAGCCGGACGTCGCCACACCGTTGCCGCGCGCAGCCGTGCCGCGCGCGCT
GGGATGCGAAACGGCATCGGCCGTCGAACAAACGGCGGACATTGCCGACATGATCGACATCAGGGGGCAGTCGCACGCCA
AGCGTGCGCTTGAGGTAGCGGCGGCCGGCGGACATCACATCCTCTTGCACGGACCTCCGGGCACTGGCAGGTCGATGCTC
GCCATGCGGCTGCCAGGACTGCTGCCGTCGTTGAGCAAGGCGCAGGCTGTCGAGACGGCAACGCTCGCGAGTCTCAGCAC
GCAAGGCTTCGACATGCGGCATTGGGGACGTCGCCCATTCCGCGCGCCGCATCACACGGCGTCGGCGGCAGCGTTGGTGG
GCGGCGGGAGTACGCCGCGCCCGGGCGAGATCAGTCTCGCGCACCGGGGCGTGCTCTTTCTTGATGAGTTGCCGGAGTTT
CAACGCAGGGTACTCGAAGTGCTGCGCGAACCGCTGGAACTCGGACATGTGACGATTTCACGCGCTGGCTCACACGCAAC
GTTTCCGGCTGCTTTCCAATTGGTCGCCGCGATGAACCCCTGCCCCTGTGGCGATTTCGGGCACCCTTCACGAAACTGTC
GCTGTACCGGCGAGGCCGTGGCGCGCTATCGCAACCGTCTTTCCGGGCCGTTGCTCGATCGCATCGACTTGCATGTCGAG
GTGCCCGCGCTGGATGCGCAGACGTTCGCCGCACCGGCCTCGGGCGAGCGCAGCGCCGACGTCGCGGCACGTGTCGGACG
CGCGCAGGCGCGGCAGCTTTCGCGTCAGGGACGGCTAAATTGCGGTCTGTCGAGCCGTGCGCTCGAAACGCAATGTCCGC
TCGCGCCGGAAGCGAAGGAGGTGCTGCATCGCGCGGTGGCCCAGCATCATTGGTCGGCACGCACCTATCACCGGGTACTG
CGTGTGGCGCGCACCATTGCCGATCTCGCGGGGCACGATGCCATTGGCGTTCCGCAGATTACCGAGGCAGTCCAGTATCG
AGAGATAACGATTTCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3WWF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.772

99.219

0.514
  comM Vibrio campbellii strain DS40M4

50.394

99.219

0.5
  comM Haemophilus influenzae Rd KW20

50.098

99.414

0.498
  comM Glaesserella parasuis strain SC1401

49.312

99.414

0.49
  comM Legionella pneumophila str. Paris

47.647

99.609

0.475
  comM Legionella pneumophila strain ERS1305867

47.647

99.609

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.969

100

0.441

Multiple sequence alignment