Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BCV59_RS26085 Genome accession   NZ_CP014583
Coordinates   4915956..4917383 (-) Length   475 a.a.
NCBI ID   WP_024226108.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN004176     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4910956..4922383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS26060 (BCV59_24970) yeeZ 4911011..4911835 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BCV59_RS26065 (BCV59_24975) yeeY 4911881..4912810 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  BCV59_RS31350 yoeI 4913025..4913087 (+) 63 WP_010723108.1 membrane protein YoeI -
  BCV59_RS26070 (BCV59_24980) plaP 4913077..4914435 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BCV59_RS26075 (BCV59_24985) tsuA 4914614..4915672 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  BCV59_RS26080 (BCV59_24990) tsuB 4915686..4915913 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BCV59_RS26085 (BCV59_24995) sbcB 4915956..4917383 (-) 1428 WP_024226108.1 exodeoxyribonuclease I Machinery gene
  BCV59_RS26090 (BCV59_25000) dacD 4917592..4918758 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BCV59_RS26095 (BCV59_25005) sbmC 4918877..4919350 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  BCV59_RS26100 (BCV59_25010) yeeA 4919549..4920607 (+) 1059 WP_001200891.1 FUSC family protein -
  BCV59_RS26105 (BCV59_25015) tmaR 4920779..4921108 (+) 330 WP_000450409.1 DUF496 family protein -
  BCV59_RS31355 (BCV59_25020) - 4921209..4921391 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  BCV59_RS29710 - 4921529..4922096 (+) 568 Protein_4787 transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54495.79 Da        Isoelectric Point: 5.4589

>NTDB_id=148749 BCV59_RS26085 WP_024226108.1 4915956..4917383(-) (sbcB) [Escherichia coli strain CFSAN004176]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENHNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=148749 BCV59_RS26085 WP_024226108.1 4915956..4917383(-) (sbcB) [Escherichia coli strain CFSAN004176]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCACAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment