Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FORC16_RS14700 Genome accession   NZ_CP011775
Coordinates   3201588..3203111 (-) Length   507 a.a.
NCBI ID   WP_011079067.1    Uniprot ID   A0A3Q0L311
Organism   Vibrio vulnificus strain FORC_016     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3196588..3208111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS14680 (FORC16_2854) - 3197873..3198859 (+) 987 WP_039555028.1 serine/threonine protein kinase -
  FORC16_RS14685 (FORC16_2855) - 3198892..3199497 (+) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  FORC16_RS14690 (FORC16_2856) - 3199551..3200432 (-) 882 WP_060532905.1 acyltransferase -
  FORC16_RS14695 (FORC16_2857) - 3200575..3201549 (+) 975 WP_060532907.1 DUF2860 domain-containing protein -
  FORC16_RS14700 (FORC16_2858) comM 3201588..3203111 (-) 1524 WP_011079067.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FORC16_RS14705 (FORC16_2859) ilvG 3203581..3205227 (+) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  FORC16_RS14710 (FORC16_2860) ilvM 3205239..3205523 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  FORC16_RS14715 (FORC16_2861) ilvE 3205535..3206473 (+) 939 WP_011079064.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54725.91 Da        Isoelectric Point: 9.1030

>NTDB_id=148646 FORC16_RS14700 WP_011079067.1 3201588..3203111(-) (comM) [Vibrio vulnificus strain FORC_016]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
IMRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=148646 FORC16_RS14700 WP_011079067.1 3201588..3203111(-) (comM) [Vibrio vulnificus strain FORC_016]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTTCAATTTCCAGCTAAGCGGATCACTGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGGCGC
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAACAACATGAATTTGT
CGGTGAGTTGGCCTTAAGTGGTGAGCTACGAGCAGTGAAAGGGGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGCCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTGGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATCTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTCG
CACACAACGGTTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAGGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAAATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCGAATGCAGCATCGCAATGGTAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACAGCGTTGCATC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCATGCGTGCGCACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L311

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment