Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FORC16_RS12845 | Genome accession | NZ_CP011775 |
| Coordinates | 2819966..2820505 (-) | Length | 179 a.a. |
| NCBI ID | WP_011079389.1 | Uniprot ID | Q7MHB8 |
| Organism | Vibrio vulnificus strain FORC_016 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2814966..2825505
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC16_RS12825 (FORC16_2527) | - | 2815383..2815703 (-) | 321 | WP_011079393.1 | MSHA biogenesis protein MshK | - |
| FORC16_RS12830 (FORC16_2528) | gspM | 2815696..2816346 (-) | 651 | WP_011079392.1 | type II secretion system protein GspM | - |
| FORC16_RS12835 (FORC16_2529) | - | 2816343..2817803 (-) | 1461 | WP_060530670.1 | hypothetical protein | - |
| FORC16_RS12840 (FORC16_2530) | csrD | 2817816..2819813 (-) | 1998 | WP_043877331.1 | RNase E specificity factor CsrD | - |
| FORC16_RS12845 (FORC16_2531) | ssb | 2819966..2820505 (-) | 540 | WP_011079389.1 | single-stranded DNA-binding protein | Machinery gene |
| FORC16_RS12850 (FORC16_2532) | qstR | 2820805..2821452 (+) | 648 | WP_011079388.1 | response regulator transcription factor | Regulator |
| FORC16_RS12855 (FORC16_2533) | galU | 2821639..2822511 (+) | 873 | WP_011079387.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FORC16_RS12860 (FORC16_2534) | uvrA | 2822654..2825476 (+) | 2823 | WP_060530668.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19794.97 Da Isoelectric Point: 5.2358
>NTDB_id=148636 FORC16_RS12845 WP_011079389.1 2819966..2820505(-) (ssb) [Vibrio vulnificus strain FORC_016]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=148636 FORC16_RS12845 WP_011079389.1 2819966..2820505(-) (ssb) [Vibrio vulnificus strain FORC_016]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.333 |
100 |
0.838 |
| ssb | Glaesserella parasuis strain SC1401 |
53.804 |
100 |
0.553 |
| ssb | Neisseria meningitidis MC58 |
46.237 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
46.237 |
100 |
0.48 |